Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
HOXC4P09017 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
HOXC4P09017 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 RBM17P3-201ENST00000417687 1192 ntBASIC17.65■□□□□ 0.42
HOXC4P09017 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXC4P09017 AC079781.3-201ENST00000449110 356 ntBASIC17.65■□□□□ 0.42
HOXC4P09017 AC106795.1-205ENST00000512851 1056 ntBASIC17.65■□□□□ 0.42
HOXC4P09017 AF238378.1-201ENST00000526806 358 ntBASIC17.65■□□□□ 0.42
HOXC4P09017 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.65■□□□□ 0.42
HOXC4P09017 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXC4P09017 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
HOXC4P09017 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.65■□□□□ 0.42
HOXC4P09017 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.65■□□□□ 0.42
HOXC4P09017 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
HOXC4P09017 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
HOXC4P09017 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.64■□□□□ 0.42
HOXC4P09017 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
HOXC4P09017 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC4P09017 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC4P09017 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.64■□□□□ 0.41
HOXC4P09017 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
HOXC4P09017 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC4P09017 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
HOXC4P09017 AP002469.2-201ENST00000531724 424 ntBASIC17.64■□□□□ 0.41
HOXC4P09017 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC4P09017 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.64■□□□□ 0.41
HOXC4P09017 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.64■□□□□ 0.41
HOXC4P09017 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HOXC4P09017 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC4P09017 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
HOXC4P09017 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXC4P09017 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXC4P09017 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC4P09017 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.63■□□□□ 0.41
HOXC4P09017 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC4P09017 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
HOXC4P09017 AL096828.2-201ENST00000567259 1965 ntBASIC17.63■□□□□ 0.41
HOXC4P09017 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC4P09017 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
HOXC4P09017 FAM220CP-201ENST00000395253 831 ntBASIC17.63■□□□□ 0.41
HOXC4P09017 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.63■□□□□ 0.41
HOXC4P09017 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.63■□□□□ 0.41
HOXC4P09017 AL662844.1-201ENST00000546340 181 ntBASIC17.63■□□□□ 0.41
HOXC4P09017 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
HOXC4P09017 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.63■□□□□ 0.41
HOXC4P09017 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC4P09017 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.63■□□□□ 0.41
HOXC4P09017 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.63■□□□□ 0.41
HOXC4P09017 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC4P09017 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
HOXC4P09017 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC4P09017 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC4P09017 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC4P09017 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms