Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL1A1P02452 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL1A1P02452 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL1A1P02452 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL1A1P02452 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
COL1A1P02452 AC018445.3-201ENST00000624177 1945 ntBASIC21.77■■□□□ 1.08
COL1A1P02452 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
COL1A1P02452 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.77■■□□□ 1.07
COL1A1P02452 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
COL1A1P02452 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.77■■□□□ 1.07
COL1A1P02452 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.77■■□□□ 1.07
COL1A1P02452 AC139887.3-201ENST00000568585 713 ntBASIC21.77■■□□□ 1.07
COL1A1P02452 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.77■■□□□ 1.07
COL1A1P02452 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.77■■□□□ 1.07
COL1A1P02452 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
COL1A1P02452 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.76■■□□□ 1.07
COL1A1P02452 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL1A1P02452 HIST2H3DP1-201ENST00000401004 416 ntBASIC21.76■■□□□ 1.07
COL1A1P02452 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 SCARNA2-201ENST00000458748 420 ntBASIC21.76■■□□□ 1.07
COL1A1P02452 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21.76■■□□□ 1.07
COL1A1P02452 AC009533.2-201ENST00000543664 586 ntBASIC21.76■■□□□ 1.07
COL1A1P02452 LITAF-211ENST00000572255 516 ntTSL 4 BASIC21.76■■□□□ 1.07
COL1A1P02452 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
COL1A1P02452 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.76■■□□□ 1.07
COL1A1P02452 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC21.76■■□□□ 1.07
COL1A1P02452 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.76■■□□□ 1.07
COL1A1P02452 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL1A1P02452 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.76■■□□□ 1.07
COL1A1P02452 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
COL1A1P02452 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC21.75■■□□□ 1.07
COL1A1P02452 BX842568.4-201ENST00000421222 227 ntBASIC21.75■■□□□ 1.07
COL1A1P02452 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.75■■□□□ 1.07
COL1A1P02452 AL049840.3-201ENST00000602669 611 ntBASIC21.75■■□□□ 1.07
COL1A1P02452 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.75■■□□□ 1.07
COL1A1P02452 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.75■■□□□ 1.07
COL1A1P02452 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC21.75■■□□□ 1.07
COL1A1P02452 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
COL1A1P02452 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
COL1A1P02452 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL1A1P02452 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC21.74■■□□□ 1.07
COL1A1P02452 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.74■■□□□ 1.07
COL1A1P02452 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.74■■□□□ 1.07
COL1A1P02452 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.74■■□□□ 1.07
COL1A1P02452 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 AC007967.3-201ENST00000434308 558 ntBASIC21.74■■□□□ 1.07
COL1A1P02452 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.74■■□□□ 1.07
COL1A1P02452 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC21.74■■□□□ 1.07
COL1A1P02452 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC21.74■■□□□ 1.07
COL1A1P02452 AC092865.5-201ENST00000545435 363 ntBASIC21.74■■□□□ 1.07
COL1A1P02452 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.74■■□□□ 1.07
COL1A1P02452 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL1A1P02452 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL1A1P02452 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.74■■□□□ 1.07
COL1A1P02452 AC010460.3-201ENST00000511359 1579 ntBASIC21.73■■□□□ 1.07
COL1A1P02452 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.73■■□□□ 1.07
COL1A1P02452 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
COL1A1P02452 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.73■■□□□ 1.07
COL1A1P02452 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.73■■□□□ 1.07
COL1A1P02452 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.73■■□□□ 1.07
COL1A1P02452 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL1A1P02452 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL1A1P02452 BX323043.1-201ENST00000641006 1765 ntBASIC21.73■■□□□ 1.07
COL1A1P02452 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
COL1A1P02452 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL1A1P02452 COX10-202ENST00000429152 875 ntTSL 2 BASIC21.73■■□□□ 1.07
COL1A1P02452 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms