Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MIR3917-201ENST00000580971 93 ntBASIC17.59■□□□□ 0.41
CLDN9O95484 AC066615.1-201ENST00000640911 628 ntBASIC17.59■□□□□ 0.41
CLDN9O95484 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLDN9O95484 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.59■□□□□ 0.41
CLDN9O95484 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CLDN9O95484 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CLDN9O95484 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.58■□□□□ 0.41
CLDN9O95484 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLDN9O95484 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CLDN9O95484 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
CLDN9O95484 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CLDN9O95484 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
CLDN9O95484 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.58■□□□□ 0.41
CLDN9O95484 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLDN9O95484 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.58■□□□□ 0.41
CLDN9O95484 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLDN9O95484 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.58■□□□□ 0.4
CLDN9O95484 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLDN9O95484 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CLDN9O95484 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.58■□□□□ 0.4
CLDN9O95484 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.58■□□□□ 0.4
CLDN9O95484 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLDN9O95484 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CLDN9O95484 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLDN9O95484 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLDN9O95484 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.58■□□□□ 0.4
CLDN9O95484 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLDN9O95484 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLDN9O95484 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLDN9O95484 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CLDN9O95484 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.57■□□□□ 0.4
CLDN9O95484 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
CLDN9O95484 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.57■□□□□ 0.4
CLDN9O95484 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.57■□□□□ 0.4
CLDN9O95484 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.57■□□□□ 0.4
CLDN9O95484 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.57■□□□□ 0.4
CLDN9O95484 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CLDN9O95484 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CLDN9O95484 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
CLDN9O95484 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.57■□□□□ 0.4
CLDN9O95484 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLDN9O95484 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CLDN9O95484 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
CLDN9O95484 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CLDN9O95484 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CLDN9O95484 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.56■□□□□ 0.4
CLDN9O95484 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.56■□□□□ 0.4
CLDN9O95484 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
CLDN9O95484 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.56■□□□□ 0.4
CLDN9O95484 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.56■□□□□ 0.4
CLDN9O95484 AC008687.5-201ENST00000593746 558 ntBASIC17.56■□□□□ 0.4
CLDN9O95484 AC145285.6-201ENST00000604632 637 ntBASIC17.56■□□□□ 0.4
CLDN9O95484 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CLDN9O95484 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CLDN9O95484 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLDN9O95484 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CLDN9O95484 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CLDN9O95484 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.56■□□□□ 0.4
CLDN9O95484 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLDN9O95484 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms