Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN3O15551 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN3O15551 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CLDN3O15551 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN3O15551 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN3O15551 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
CLDN3O15551 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN3O15551 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CLDN3O15551 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CLDN3O15551 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.83■□□□□ 0.77
CLDN3O15551 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.83■□□□□ 0.77
CLDN3O15551 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.83■□□□□ 0.77
CLDN3O15551 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.83■□□□□ 0.77
CLDN3O15551 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.83■□□□□ 0.77
CLDN3O15551 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.83■□□□□ 0.77
CLDN3O15551 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLDN3O15551 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
CLDN3O15551 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CLDN3O15551 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLDN3O15551 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLDN3O15551 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.83■□□□□ 0.76
CLDN3O15551 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
CLDN3O15551 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.82■□□□□ 0.76
CLDN3O15551 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CLDN3O15551 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.82■□□□□ 0.76
CLDN3O15551 CHCHD2P8-201ENST00000429873 447 ntBASIC19.82■□□□□ 0.76
CLDN3O15551 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.82■□□□□ 0.76
CLDN3O15551 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.82■□□□□ 0.76
CLDN3O15551 AC090616.6-201ENST00000582640 721 ntBASIC19.82■□□□□ 0.76
CLDN3O15551 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.82■□□□□ 0.76
CLDN3O15551 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CLDN3O15551 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CLDN3O15551 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 LINC00602-201ENST00000629776 2065 ntBASIC19.82■□□□□ 0.76
CLDN3O15551 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN3O15551 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN3O15551 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
CLDN3O15551 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN3O15551 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN3O15551 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN3O15551 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN3O15551 PHGDH-209ENST00000641074 1780 ntBASIC19.81■□□□□ 0.76
CLDN3O15551 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN3O15551 ATP5G2P1-201ENST00000433580 426 ntBASIC19.81■□□□□ 0.76
CLDN3O15551 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.81■□□□□ 0.76
CLDN3O15551 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN3O15551 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.81■□□□□ 0.76
CLDN3O15551 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.81■□□□□ 0.76
CLDN3O15551 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.81■□□□□ 0.76
CLDN3O15551 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN3O15551 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN3O15551 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN3O15551 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN3O15551 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN3O15551 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 AC135050.7-201ENST00000624508 2218 ntBASIC19.8■□□□□ 0.76
CLDN3O15551 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CLDN3O15551 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.8■□□□□ 0.76
CLDN3O15551 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CLDN3O15551 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN3O15551 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
CLDN3O15551 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CLDN3O15551 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.8■□□□□ 0.76
CLDN3O15551 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CLDN3O15551 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN3O15551 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.8■□□□□ 0.76
CLDN3O15551 GUSBP12-201ENST00000513727 720 ntBASIC19.8■□□□□ 0.76
CLDN3O15551 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.8■□□□□ 0.76
CLDN3O15551 NPAP1P7-201ENST00000613027 823 ntBASIC19.8■□□□□ 0.76
CLDN3O15551 IGHV3-41-201ENST00000613121 348 ntBASIC19.8■□□□□ 0.76
CLDN3O15551 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN3O15551 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CLDN3O15551 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN3O15551 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms