Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.48■□□□□ 0.07
SDCBPO00560 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.48■□□□□ 0.07
SDCBPO00560 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC15.48■□□□□ 0.07
SDCBPO00560 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SDCBPO00560 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.48■□□□□ 0.07
SDCBPO00560 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.48■□□□□ 0.07
SDCBPO00560 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.48■□□□□ 0.07
SDCBPO00560 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.48■□□□□ 0.07
SDCBPO00560 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.48■□□□□ 0.07
SDCBPO00560 DGCR10-201ENST00000609839 495 ntBASIC15.48■□□□□ 0.07
SDCBPO00560 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.48■□□□□ 0.07
SDCBPO00560 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SDCBPO00560 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SDCBPO00560 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.48■□□□□ 0.07
SDCBPO00560 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.48■□□□□ 0.07
SDCBPO00560 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SDCBPO00560 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
SDCBPO00560 FLJ13224-201ENST00000313737 1514 ntBASIC15.48■□□□□ 0.07
SDCBPO00560 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
SDCBPO00560 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SDCBPO00560 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.47■□□□□ 0.07
SDCBPO00560 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
SDCBPO00560 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
SDCBPO00560 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC15.47■□□□□ 0.07
SDCBPO00560 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.47■□□□□ 0.07
SDCBPO00560 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC15.47■□□□□ 0.07
SDCBPO00560 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
SDCBPO00560 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
SDCBPO00560 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.47■□□□□ 0.07
SDCBPO00560 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 AC116562.2-201ENST00000507042 360 ntBASIC15.47■□□□□ 0.07
SDCBPO00560 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
SDCBPO00560 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC15.47■□□□□ 0.07
SDCBPO00560 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC15.47■□□□□ 0.07
SDCBPO00560 CYGB-204ENST00000589342 815 ntTSL 3 BASIC15.47■□□□□ 0.07
SDCBPO00560 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.47■□□□□ 0.07
SDCBPO00560 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 AC080080.1-201ENST00000625121 2420 ntBASIC15.47■□□□□ 0.07
SDCBPO00560 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
SDCBPO00560 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
SDCBPO00560 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SDCBPO00560 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.46■□□□□ 0.07
SDCBPO00560 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 AC099343.3-201ENST00000605834 2503 ntBASIC15.46■□□□□ 0.07
SDCBPO00560 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 AL096828.2-201ENST00000567259 1965 ntBASIC15.46■□□□□ 0.07
SDCBPO00560 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 MIR718-201ENST00000390190 70 ntBASIC15.46■□□□□ 0.07
SDCBPO00560 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.46■□□□□ 0.07
SDCBPO00560 MFAP1P1-201ENST00000442257 1255 ntBASIC15.46■□□□□ 0.07
SDCBPO00560 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 AC097488.1-201ENST00000507834 756 ntBASIC15.46■□□□□ 0.07
SDCBPO00560 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.46■□□□□ 0.07
SDCBPO00560 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.46■□□□□ 0.07
SDCBPO00560 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.46■□□□□ 0.07
SDCBPO00560 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.46■□□□□ 0.07
SDCBPO00560 TMEM191A-211ENST00000637163 1067 ntBASIC15.46■□□□□ 0.07
SDCBPO00560 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 AL645608.8-201ENST00000606034 2086 ntBASIC15.46■□□□□ 0.07
SDCBPO00560 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
SDCBPO00560 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.46■□□□□ 0.07
SDCBPO00560 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SDCBPO00560 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
SDCBPO00560 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.46■□□□□ 0.06
SDCBPO00560 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
SDCBPO00560 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.46■□□□□ 0.06
SDCBPO00560 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.46■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms