Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VPS28Q9UK41 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS28Q9UK41 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS28Q9UK41 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS28Q9UK41 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS28Q9UK41 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS28Q9UK41 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.7■□□□□ 0.58
VPS28Q9UK41 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS28Q9UK41 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS28Q9UK41 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS28Q9UK41 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 AC020916.1-201ENST00000587762 1774 ntBASIC18.69■□□□□ 0.58
VPS28Q9UK41 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 BICD1-207ENST00000551848 1962 ntBASIC18.69■□□□□ 0.58
VPS28Q9UK41 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS28Q9UK41 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VPS28Q9UK41 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 IGHGP-201ENST00000390555 1178 ntBASIC18.68■□□□□ 0.58
VPS28Q9UK41 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 KRT8P26-201ENST00000534154 1276 ntBASIC18.68■□□□□ 0.58
VPS28Q9UK41 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 AC008687.5-201ENST00000593746 558 ntBASIC18.68■□□□□ 0.58
VPS28Q9UK41 GPR32P1-201ENST00000601788 811 ntBASIC18.68■□□□□ 0.58
VPS28Q9UK41 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.68■□□□□ 0.58
VPS28Q9UK41 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 KRT89P-201ENST00000620027 1478 ntBASIC18.68■□□□□ 0.58
VPS28Q9UK41 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 AC005332.8-201ENST00000622750 2735 ntBASIC18.68■□□□□ 0.58
VPS28Q9UK41 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS28Q9UK41 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VPS28Q9UK41 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms