Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 KRT16P1-201ENST00000399124 1418 ntBASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 AD000864.1-201ENST00000624076 2295 ntBASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 AL353708.3-201ENST00000610272 989 ntBASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SMARCAL1Q9NZC9 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 MESTP1-201ENST00000404287 994 ntBASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCAL1Q9NZC9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 B3GAT3P1-201ENST00000471720 806 ntBASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMARCAL1Q9NZC9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMARCAL1Q9NZC9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMARCAL1Q9NZC9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMARCAL1Q9NZC9 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 AP000593.1-201ENST00000393668 712 ntBASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 MCCD1P1-208ENST00000445732 328 ntBASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 UBE2SP1-201ENST00000450587 669 ntBASIC19.14■□□□□ 0.65
SMARCAL1Q9NZC9 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms