Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.8■□□□□ 0.28
CHD8Q9HCK8 AL512408.1-201ENST00000569378 2000 ntBASIC16.8■□□□□ 0.28
CHD8Q9HCK8 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD8Q9HCK8 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD8Q9HCK8 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD8Q9HCK8 RHOQP3-201ENST00000437982 621 ntBASIC16.8■□□□□ 0.28
CHD8Q9HCK8 ACA64.2-201ENST00000459014 129 ntBASIC16.8■□□□□ 0.28
CHD8Q9HCK8 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD8Q9HCK8 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD8Q9HCK8 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CHD8Q9HCK8 AC025580.3-201ENST00000617932 1424 ntBASIC16.8■□□□□ 0.28
CHD8Q9HCK8 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 AC003669.1-201ENST00000334569 611 ntBASIC16.79■□□□□ 0.28
CHD8Q9HCK8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 Z82202.1-201ENST00000623446 1880 ntBASIC16.79■□□□□ 0.28
CHD8Q9HCK8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 FAM58DP-201ENST00000428076 619 ntBASIC16.79■□□□□ 0.28
CHD8Q9HCK8 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD8Q9HCK8 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 KRT18P32-201ENST00000424695 1287 ntBASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AL163051.1-201ENST00000569214 1512 ntBASIC16.78■□□□□ 0.28
CHD8Q9HCK8 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD8Q9HCK8 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 TIMM8BP1-201ENST00000452384 211 ntBASIC16.77■□□□□ 0.28
CHD8Q9HCK8 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 AP001059.3-201ENST00000619053 235 ntBASIC16.77■□□□□ 0.28
CHD8Q9HCK8 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.77■□□□□ 0.28
CHD8Q9HCK8 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHD8Q9HCK8 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CHD8Q9HCK8 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHD8Q9HCK8 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHD8Q9HCK8 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CHD8Q9HCK8 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHD8Q9HCK8 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.77■□□□□ 0.27
CHD8Q9HCK8 MTCL1P1-201ENST00000446207 792 ntBASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms