Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH9Q9HC56 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
PCDH9Q9HC56 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PCDH9Q9HC56 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
PCDH9Q9HC56 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH9Q9HC56 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.8■□□□□ 0.6
PCDH9Q9HC56 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDH9Q9HC56 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH9Q9HC56 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 AC009947.2-201ENST00000444014 672 ntBASIC18.79■□□□□ 0.6
PCDH9Q9HC56 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 ATP5G1P1-201ENST00000448724 379 ntBASIC18.79■□□□□ 0.6
PCDH9Q9HC56 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.79■□□□□ 0.6
PCDH9Q9HC56 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH9Q9HC56 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 AC093010.1-201ENST00000473625 1624 ntBASIC18.78■□□□□ 0.6
PCDH9Q9HC56 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 TERF1P1-201ENST00000311003 1181 ntBASIC18.78■□□□□ 0.6
PCDH9Q9HC56 KRT18P23-201ENST00000435622 1283 ntBASIC18.78■□□□□ 0.6
PCDH9Q9HC56 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 AL138966.2-201ENST00000621997 464 ntBASIC18.78■□□□□ 0.6
PCDH9Q9HC56 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH9Q9HC56 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 AC138932.1-201ENST00000534164 6830 ntBASIC18.77■□□□□ 0.6
PCDH9Q9HC56 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 AC005521.1-201ENST00000393351 872 ntBASIC18.77■□□□□ 0.6
PCDH9Q9HC56 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.77■□□□□ 0.6
PCDH9Q9HC56 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms