Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
USP38Q8NB14 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.29■□□□□ 0.84
USP38Q8NB14 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.29■□□□□ 0.84
USP38Q8NB14 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.29■□□□□ 0.84
USP38Q8NB14 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.29■□□□□ 0.84
USP38Q8NB14 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.29■□□□□ 0.84
USP38Q8NB14 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.29■□□□□ 0.84
USP38Q8NB14 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.29■□□□□ 0.84
USP38Q8NB14 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
USP38Q8NB14 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.29■□□□□ 0.84
USP38Q8NB14 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 AC135050.7-201ENST00000624508 2218 ntBASIC20.29■□□□□ 0.84
USP38Q8NB14 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP38Q8NB14 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.28■□□□□ 0.84
USP38Q8NB14 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.28■□□□□ 0.84
USP38Q8NB14 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.28■□□□□ 0.84
USP38Q8NB14 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.28■□□□□ 0.84
USP38Q8NB14 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.28■□□□□ 0.84
USP38Q8NB14 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.28■□□□□ 0.84
USP38Q8NB14 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.28■□□□□ 0.84
USP38Q8NB14 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 BX842568.4-201ENST00000421222 227 ntBASIC20.28■□□□□ 0.84
USP38Q8NB14 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.28■□□□□ 0.84
USP38Q8NB14 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.28■□□□□ 0.84
USP38Q8NB14 GPR32P1-201ENST00000601788 811 ntBASIC20.28■□□□□ 0.84
USP38Q8NB14 AC138894.3-201ENST00000603787 634 ntBASIC20.28■□□□□ 0.84
USP38Q8NB14 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.28■□□□□ 0.84
USP38Q8NB14 AL353801.3-201ENST00000609898 542 ntBASIC20.28■□□□□ 0.84
USP38Q8NB14 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP38Q8NB14 WIZP1-201ENST00000531444 2299 ntBASIC20.28■□□□□ 0.84
USP38Q8NB14 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.28■□□□□ 0.84
USP38Q8NB14 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.27■□□□□ 0.84
USP38Q8NB14 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.27■□□□□ 0.84
USP38Q8NB14 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
USP38Q8NB14 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.27■□□□□ 0.84
USP38Q8NB14 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
USP38Q8NB14 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 AKR1C7P-201ENST00000305623 895 ntBASIC20.27■□□□□ 0.84
USP38Q8NB14 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
USP38Q8NB14 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.27■□□□□ 0.84
USP38Q8NB14 TOB2P1-201ENST00000469761 992 ntBASIC20.27■□□□□ 0.84
USP38Q8NB14 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.27■□□□□ 0.84
USP38Q8NB14 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.27■□□□□ 0.84
USP38Q8NB14 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.27■□□□□ 0.84
USP38Q8NB14 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP38Q8NB14 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP38Q8NB14 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.27■□□□□ 0.83
USP38Q8NB14 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.27■□□□□ 0.83
USP38Q8NB14 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 KRT89P-201ENST00000620027 1478 ntBASIC20.26■□□□□ 0.83
USP38Q8NB14 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.26■□□□□ 0.83
USP38Q8NB14 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.26■□□□□ 0.83
USP38Q8NB14 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
USP38Q8NB14 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.26■□□□□ 0.83
USP38Q8NB14 AC024563.2-201ENST00000603282 481 ntBASIC20.26■□□□□ 0.83
USP38Q8NB14 IGHV3-41-201ENST00000613121 348 ntBASIC20.26■□□□□ 0.83
USP38Q8NB14 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
USP38Q8NB14 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.26■□□□□ 0.83
USP38Q8NB14 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 AL390961.4-201ENST00000623958 2535 ntBASIC20.26■□□□□ 0.83
USP38Q8NB14 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
USP38Q8NB14 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 AC090164.3-201ENST00000610780 2143 ntBASIC20.26■□□□□ 0.83
USP38Q8NB14 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP38Q8NB14 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.26■□□□□ 0.83
USP38Q8NB14 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.26■□□□□ 0.83
USP38Q8NB14 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms