Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 PCDHAC2-203ENST00000615316 3011 ntBASIC18.58■□□□□ 0.56
SLC44A3Q8N4M1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 AC004832.2-201ENST00000426397 482 ntBASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC44A3Q8N4M1 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 RNF165-205ENST00000588679 2904 ntBASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 AC007967.2-201ENST00000432613 625 ntBASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC44A3Q8N4M1 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 MYLKP1-201ENST00000509077 1580 ntBASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SLC44A3Q8N4M1 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC44A3Q8N4M1 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms