Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
DEPDC4Q8N2C3 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
DEPDC4Q8N2C3 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
DEPDC4Q8N2C3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.3
DEPDC4Q8N2C3 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.96■□□□□ 0.3
DEPDC4Q8N2C3 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.96■□□□□ 0.3
DEPDC4Q8N2C3 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
DEPDC4Q8N2C3 KRT16P1-201ENST00000399124 1418 ntBASIC16.96■□□□□ 0.3
DEPDC4Q8N2C3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 KRT8P32-201ENST00000512863 1461 ntBASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 BX088651.1-201ENST00000540551 451 ntBASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DEPDC4Q8N2C3 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 REXO1L9P-201ENST00000604264 2108 ntBASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
DEPDC4Q8N2C3 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 AC008556.1-201ENST00000610908 2040 ntBASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 NUDT16P1-203ENST00000513809 620 ntBASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 LINC01023-201ENST00000606054 436 ntBASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 AL031985.4-201ENST00000642138 673 ntBASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DEPDC4Q8N2C3 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms