Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 MIR1238-201ENST00000408483 83 ntBASIC20.76■□□□□ 0.91
ATL3Q6DD88 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 AL390955.1-201ENST00000428694 934 ntBASIC20.76■□□□□ 0.91
ATL3Q6DD88 AC128688.1-201ENST00000487626 519 ntBASIC20.76■□□□□ 0.91
ATL3Q6DD88 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 AC022898.2-201ENST00000616822 1312 ntBASIC20.76■□□□□ 0.91
ATL3Q6DD88 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 AC132938.6-201ENST00000623828 1655 ntBASIC20.75■□□□□ 0.91
ATL3Q6DD88 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.75■□□□□ 0.91
ATL3Q6DD88 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATL3Q6DD88 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
ATL3Q6DD88 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.74■□□□□ 0.91
ATL3Q6DD88 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 NEK4P2-201ENST00000580004 1012 ntBASIC20.74■□□□□ 0.91
ATL3Q6DD88 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
ATL3Q6DD88 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
ATL3Q6DD88 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATL3Q6DD88 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 AL645608.8-201ENST00000606034 2086 ntBASIC20.73■□□□□ 0.91
ATL3Q6DD88 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.73■□□□□ 0.91
ATL3Q6DD88 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATL3Q6DD88 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.72■□□□□ 0.91
ATL3Q6DD88 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.72■□□□□ 0.91
ATL3Q6DD88 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
ATL3Q6DD88 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
ATL3Q6DD88 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ATL3Q6DD88 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.72■□□□□ 0.91
ATL3Q6DD88 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ATL3Q6DD88 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms