Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.08■□□□□ 0.97
KRT40Q6A162 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.08■□□□□ 0.97
KRT40Q6A162 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
KRT40Q6A162 AC012313.10-201ENST00000623509 926 ntBASIC21.08■□□□□ 0.97
KRT40Q6A162 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.08■□□□□ 0.97
KRT40Q6A162 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.08■□□□□ 0.97
KRT40Q6A162 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
KRT40Q6A162 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
KRT40Q6A162 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.08■□□□□ 0.96
KRT40Q6A162 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT40Q6A162 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
KRT40Q6A162 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT40Q6A162 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
KRT40Q6A162 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.08■□□□□ 0.96
KRT40Q6A162 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT40Q6A162 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT40Q6A162 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
KRT40Q6A162 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT40Q6A162 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
KRT40Q6A162 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
KRT40Q6A162 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
KRT40Q6A162 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.07■□□□□ 0.96
KRT40Q6A162 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.07■□□□□ 0.96
KRT40Q6A162 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
KRT40Q6A162 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
KRT40Q6A162 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT40Q6A162 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 AC011558.1-201ENST00000623459 338 ntBASIC21.07■□□□□ 0.96
KRT40Q6A162 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.07■□□□□ 0.96
KRT40Q6A162 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT40Q6A162 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT40Q6A162 AC068880.1-201ENST00000507289 2297 ntBASIC21.07■□□□□ 0.96
KRT40Q6A162 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.07■□□□□ 0.96
KRT40Q6A162 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT40Q6A162 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT40Q6A162 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT40Q6A162 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT40Q6A162 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.06■□□□□ 0.96
KRT40Q6A162 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.06■□□□□ 0.96
KRT40Q6A162 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT40Q6A162 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.06■□□□□ 0.96
KRT40Q6A162 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT40Q6A162 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
KRT40Q6A162 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
KRT40Q6A162 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 AC008764.6-201ENST00000595909 2069 ntBASIC21.06■□□□□ 0.96
KRT40Q6A162 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
KRT40Q6A162 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
KRT40Q6A162 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT40Q6A162 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.05■□□□□ 0.96
KRT40Q6A162 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
KRT40Q6A162 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 AC093010.1-201ENST00000473625 1624 ntBASIC21.05■□□□□ 0.96
KRT40Q6A162 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.05■□□□□ 0.96
KRT40Q6A162 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
KRT40Q6A162 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.05■□□□□ 0.96
KRT40Q6A162 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.05■□□□□ 0.96
KRT40Q6A162 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.05■□□□□ 0.96
KRT40Q6A162 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.05■□□□□ 0.96
KRT40Q6A162 AL441883.1-201ENST00000566170 1045 ntBASIC21.05■□□□□ 0.96
KRT40Q6A162 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.05■□□□□ 0.96
KRT40Q6A162 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.05■□□□□ 0.96
KRT40Q6A162 AL121956.5-201ENST00000625261 221 ntBASIC21.05■□□□□ 0.96
KRT40Q6A162 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT40Q6A162 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.05■□□□□ 0.96
KRT40Q6A162 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms