Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 HLA-A-201ENST00000376802 1334 ntBASIC19.31■□□□□ 0.68
USP41Q3LFD5 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 MTCL1P1-201ENST00000446207 792 ntBASIC19.31■□□□□ 0.68
USP41Q3LFD5 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 LINC00602-201ENST00000629776 2065 ntBASIC19.31■□□□□ 0.68
USP41Q3LFD5 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.31■□□□□ 0.68
USP41Q3LFD5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP41Q3LFD5 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
USP41Q3LFD5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 TP73-AS1-210ENST00000637775 1455 ntBASIC19.3■□□□□ 0.68
USP41Q3LFD5 AC004408.2-201ENST00000623613 2777 ntBASIC19.3■□□□□ 0.68
USP41Q3LFD5 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 RCN1P2-201ENST00000398357 915 ntBASIC19.3■□□□□ 0.68
USP41Q3LFD5 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.3■□□□□ 0.68
USP41Q3LFD5 AC132008.2-207ENST00000454517 770 ntBASIC19.3■□□□□ 0.68
USP41Q3LFD5 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.3■□□□□ 0.68
USP41Q3LFD5 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.3■□□□□ 0.68
USP41Q3LFD5 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.3■□□□□ 0.68
USP41Q3LFD5 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.3■□□□□ 0.68
USP41Q3LFD5 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.3■□□□□ 0.68
USP41Q3LFD5 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.3■□□□□ 0.68
USP41Q3LFD5 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP41Q3LFD5 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 LINC01126-201ENST00000623515 1646 ntBASIC19.29■□□□□ 0.68
USP41Q3LFD5 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 FAM197Y8-203ENST00000450145 560 ntBASIC19.29■□□□□ 0.68
USP41Q3LFD5 AC009533.2-201ENST00000543664 586 ntBASIC19.29■□□□□ 0.68
USP41Q3LFD5 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 TP73-AS1-207ENST00000624167 988 ntBASIC19.29■□□□□ 0.68
USP41Q3LFD5 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
USP41Q3LFD5 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP41Q3LFD5 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP41Q3LFD5 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.28■□□□□ 0.68
USP41Q3LFD5 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms