Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD3Q3KNS1 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 SPDYE15P-201ENST00000424157 909 ntBASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 AC112907.2-201ENST00000448639 330 ntBASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 REXO1L9P-201ENST00000604264 2108 ntBASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 AL121956.5-201ENST00000625261 221 ntBASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 PHGDH-209ENST00000641074 1780 ntBASIC17.79■□□□□ 0.44
PTCHD3Q3KNS1 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 PCED1CP-201ENST00000419887 785 ntBASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 FAM86EP-206ENST00000510506 987 ntBASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD3Q3KNS1 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 AC005332.8-201ENST00000622750 2735 ntBASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 STARP1-201ENST00000397973 869 ntBASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 MIR3917-201ENST00000580971 93 ntBASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms