Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SOX4Q06945 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX4Q06945 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SOX4Q06945 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.38■□□□□ 0.69
SOX4Q06945 FAAHP1-202ENST00000446499 1238 ntBASIC19.38■□□□□ 0.69
SOX4Q06945 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.38■□□□□ 0.69
SOX4Q06945 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.38■□□□□ 0.69
SOX4Q06945 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.38■□□□□ 0.69
SOX4Q06945 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.38■□□□□ 0.69
SOX4Q06945 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SOX4Q06945 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.38■□□□□ 0.69
SOX4Q06945 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SOX4Q06945 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.38■□□□□ 0.69
SOX4Q06945 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.38■□□□□ 0.69
SOX4Q06945 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.38■□□□□ 0.69
SOX4Q06945 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.38■□□□□ 0.69
SOX4Q06945 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX4Q06945 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.37■□□□□ 0.69
SOX4Q06945 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX4Q06945 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 RCN1P2-201ENST00000398357 915 ntBASIC19.37■□□□□ 0.69
SOX4Q06945 POM121L3P-201ENST00000419331 1163 ntBASIC19.37■□□□□ 0.69
SOX4Q06945 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.37■□□□□ 0.69
SOX4Q06945 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.37■□□□□ 0.69
SOX4Q06945 AC112698.1-201ENST00000510299 916 ntBASIC19.37■□□□□ 0.69
SOX4Q06945 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX4Q06945 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX4Q06945 AC114341.1-201ENST00000618070 349 ntBASIC19.37■□□□□ 0.69
SOX4Q06945 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.37■□□□□ 0.69
SOX4Q06945 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
SOX4Q06945 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX4Q06945 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
SOX4Q06945 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SOX4Q06945 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX4Q06945 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.37■□□□□ 0.69
SOX4Q06945 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SOX4Q06945 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
SOX4Q06945 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX4Q06945 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX4Q06945 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 AC125634.1-201ENST00000438758 1403 ntBASIC19.36■□□□□ 0.69
SOX4Q06945 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
SOX4Q06945 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX4Q06945 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.36■□□□□ 0.69
SOX4Q06945 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.36■□□□□ 0.69
SOX4Q06945 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX4Q06945 AC009078.2-202ENST00000463353 338 ntBASIC19.36■□□□□ 0.69
SOX4Q06945 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.36■□□□□ 0.69
SOX4Q06945 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.36■□□□□ 0.69
SOX4Q06945 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.36■□□□□ 0.69
SOX4Q06945 MIR5100-201ENST00000579544 119 ntBASIC19.36■□□□□ 0.69
SOX4Q06945 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.36■□□□□ 0.69
SOX4Q06945 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.36■□□□□ 0.69
SOX4Q06945 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX4Q06945 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX4Q06945 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.36■□□□□ 0.69
SOX4Q06945 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SOX4Q06945 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX4Q06945 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 AC135776.1-201ENST00000319817 2481 ntBASIC19.35■□□□□ 0.69
SOX4Q06945 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.35■□□□□ 0.69
SOX4Q06945 TP73-AS1-210ENST00000637775 1455 ntBASIC19.35■□□□□ 0.69
SOX4Q06945 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SOX4Q06945 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 AC093677.2-201ENST00000600169 1863 ntBASIC19.35■□□□□ 0.69
SOX4Q06945 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX4Q06945 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SOX4Q06945 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SOX4Q06945 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX4Q06945 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 FDX1P1-201ENST00000449115 551 ntBASIC19.35■□□□□ 0.69
SOX4Q06945 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.35■□□□□ 0.69
SOX4Q06945 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.35■□□□□ 0.69
SOX4Q06945 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX4Q06945 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms