Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.81■□□□□ 0.44
CDH13P55290 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CDH13P55290 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 MIR1238-201ENST00000408483 83 ntBASIC17.81■□□□□ 0.44
CDH13P55290 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH13P55290 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.81■□□□□ 0.44
CDH13P55290 FITM1-202ENST00000559294 800 ntBASIC17.81■□□□□ 0.44
CDH13P55290 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH13P55290 WWOX-216ENST00000569818 525 ntBASIC17.81■□□□□ 0.44
CDH13P55290 MIR4785-201ENST00000585005 73 ntBASIC17.81■□□□□ 0.44
CDH13P55290 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH13P55290 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.81■□□□□ 0.44
CDH13P55290 AC020916.1-201ENST00000587762 1774 ntBASIC17.81■□□□□ 0.44
CDH13P55290 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH13P55290 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
CDH13P55290 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH13P55290 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH13P55290 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH13P55290 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH13P55290 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDH13P55290 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDH13P55290 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDH13P55290 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CDH13P55290 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH13P55290 AC007663.1-201ENST00000438948 1240 ntBASIC17.8■□□□□ 0.44
CDH13P55290 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CDH13P55290 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH13P55290 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CDH13P55290 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH13P55290 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDH13P55290 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDH13P55290 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDH13P55290 KRT8P7-201ENST00000533003 1432 ntBASIC17.8■□□□□ 0.44
CDH13P55290 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH13P55290 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH13P55290 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CDH13P55290 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CDH13P55290 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CDH13P55290 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH13P55290 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CDH13P55290 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH13P55290 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH13P55290 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 MIR718-201ENST00000390190 70 ntBASIC17.79■□□□□ 0.44
CDH13P55290 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH13P55290 CCR12P-201ENST00000446203 998 ntBASIC17.79■□□□□ 0.44
CDH13P55290 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.79■□□□□ 0.44
CDH13P55290 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH13P55290 BX088651.1-201ENST00000540551 451 ntBASIC17.79■□□□□ 0.44
CDH13P55290 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.79■□□□□ 0.44
CDH13P55290 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CDH13P55290 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
CDH13P55290 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.79■□□□□ 0.44
CDH13P55290 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.79■□□□□ 0.44
CDH13P55290 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.79■□□□□ 0.44
CDH13P55290 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
CDH13P55290 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDH13P55290 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDH13P55290 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms