Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CDX1P47902 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC14.86□□□□□ -0.03
CDX1P47902 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
CDX1P47902 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
CDX1P47902 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CDX1P47902 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 AL031598.1-201ENST00000561511 1773 ntBASIC14.86□□□□□ -0.03
CDX1P47902 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC14.86□□□□□ -0.03
CDX1P47902 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC14.86□□□□□ -0.03
CDX1P47902 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC14.86□□□□□ -0.03
CDX1P47902 TMA16-209ENST00000513272 803 ntTSL 2 BASIC14.86□□□□□ -0.03
CDX1P47902 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC14.86□□□□□ -0.03
CDX1P47902 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
CDX1P47902 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CDX1P47902 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CDX1P47902 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.86□□□□□ -0.03
CDX1P47902 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.86□□□□□ -0.03
CDX1P47902 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CDX1P47902 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.86□□□□□ -0.03
CDX1P47902 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
CDX1P47902 AC012317.2-201ENST00000623305 2251 ntBASIC14.86□□□□□ -0.03
CDX1P47902 AD000864.1-201ENST00000624076 2295 ntBASIC14.86□□□□□ -0.03
CDX1P47902 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDX1P47902 AL118508.1-201ENST00000613502 2345 ntBASIC14.86□□□□□ -0.03
CDX1P47902 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CDX1P47902 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
CDX1P47902 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CDX1P47902 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
CDX1P47902 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 KRT18P21-201ENST00000515767 1272 ntBASIC14.85□□□□□ -0.03
CDX1P47902 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC14.85□□□□□ -0.03
CDX1P47902 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC14.85□□□□□ -0.03
CDX1P47902 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC14.85□□□□□ -0.03
CDX1P47902 DUT-205ENST00000558813 769 ntTSL 2 BASIC14.85□□□□□ -0.03
CDX1P47902 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.85□□□□□ -0.03
CDX1P47902 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.85□□□□□ -0.03
CDX1P47902 MADD-208ENST00000405573 1823 ntTSL 5 BASIC14.85□□□□□ -0.03
CDX1P47902 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CDX1P47902 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.85□□□□□ -0.03
CDX1P47902 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDX1P47902 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC14.84□□□□□ -0.03
CDX1P47902 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC14.84□□□□□ -0.03
CDX1P47902 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
CDX1P47902 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC14.84□□□□□ -0.03
CDX1P47902 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
CDX1P47902 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 HIST1H2APS4-201ENST00000362070 348 ntBASIC14.84□□□□□ -0.03
CDX1P47902 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC14.84□□□□□ -0.03
CDX1P47902 AC113347.1-201ENST00000413321 391 ntBASIC14.84□□□□□ -0.03
CDX1P47902 TSPY17P-201ENST00000450329 467 ntBASIC14.84□□□□□ -0.03
CDX1P47902 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
CDX1P47902 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CDX1P47902 P4HB-223ENST00000576390 439 ntTSL 4 BASIC14.84□□□□□ -0.03
CDX1P47902 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC14.84□□□□□ -0.03
CDX1P47902 AC092865.7-201ENST00000641832 219 ntBASIC14.84□□□□□ -0.03
CDX1P47902 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CDX1P47902 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CDX1P47902 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms