Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.65■□□□□ 0.74
TNFSF9P41273 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TNFSF9P41273 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TNFSF9P41273 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TNFSF9P41273 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.64■□□□□ 0.74
TNFSF9P41273 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
TNFSF9P41273 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TNFSF9P41273 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.64■□□□□ 0.73
TNFSF9P41273 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 LINC00265-3P-201ENST00000447588 903 ntBASIC19.64■□□□□ 0.73
TNFSF9P41273 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.64■□□□□ 0.73
TNFSF9P41273 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.64■□□□□ 0.73
TNFSF9P41273 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TNFSF9P41273 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFSF9P41273 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
TNFSF9P41273 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFSF9P41273 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 REXO1L9P-201ENST00000604264 2108 ntBASIC19.63■□□□□ 0.73
TNFSF9P41273 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.63■□□□□ 0.73
TNFSF9P41273 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TNFSF9P41273 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.63■□□□□ 0.73
TNFSF9P41273 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.63■□□□□ 0.73
TNFSF9P41273 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.63■□□□□ 0.73
TNFSF9P41273 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.63■□□□□ 0.73
TNFSF9P41273 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFSF9P41273 AC068472.1-201ENST00000474589 881 ntBASIC19.63■□□□□ 0.73
TNFSF9P41273 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.63■□□□□ 0.73
TNFSF9P41273 AP005901.3-202ENST00000581653 237 ntBASIC19.63■□□□□ 0.73
TNFSF9P41273 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFSF9P41273 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 AC012313.10-201ENST00000623509 926 ntBASIC19.63■□□□□ 0.73
TNFSF9P41273 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.63■□□□□ 0.73
TNFSF9P41273 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFSF9P41273 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFSF9P41273 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFSF9P41273 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFSF9P41273 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.62■□□□□ 0.73
TNFSF9P41273 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TNFSF9P41273 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
TNFSF9P41273 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFSF9P41273 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFSF9P41273 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TNFSF9P41273 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFSF9P41273 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.62■□□□□ 0.73
TNFSF9P41273 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.62■□□□□ 0.73
TNFSF9P41273 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.62■□□□□ 0.73
TNFSF9P41273 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.62■□□□□ 0.73
TNFSF9P41273 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFSF9P41273 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.62■□□□□ 0.73
TNFSF9P41273 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TNFSF9P41273 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TNFSF9P41273 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFSF9P41273 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
TNFSF9P41273 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFSF9P41273 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFSF9P41273 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFSF9P41273 NEFHP1-201ENST00000412845 2629 ntBASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms