Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.14■□□□□ 0.33
SOX3P41225 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.14■□□□□ 0.33
SOX3P41225 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SOX3P41225 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.14■□□□□ 0.33
SOX3P41225 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
SOX3P41225 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 AC034232.1-201ENST00000506026 1064 ntBASIC17.14■□□□□ 0.33
SOX3P41225 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.14■□□□□ 0.33
SOX3P41225 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
SOX3P41225 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.14■□□□□ 0.33
SOX3P41225 AC083906.6-201ENST00000641366 219 ntBASIC17.14■□□□□ 0.33
SOX3P41225 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SOX3P41225 MTMR9LP-203ENST00000426597 1545 ntBASIC17.14■□□□□ 0.33
SOX3P41225 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SOX3P41225 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.14■□□□□ 0.33
SOX3P41225 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SOX3P41225 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.13■□□□□ 0.33
SOX3P41225 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.13■□□□□ 0.33
SOX3P41225 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SOX3P41225 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.13■□□□□ 0.33
SOX3P41225 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
SOX3P41225 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SOX3P41225 AL357033.4-201ENST00000617703 1807 ntBASIC17.13■□□□□ 0.33
SOX3P41225 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.13■□□□□ 0.33
SOX3P41225 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.13■□□□□ 0.33
SOX3P41225 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.13■□□□□ 0.33
SOX3P41225 RASA4DP-201ENST00000460726 1199 ntBASIC17.13■□□□□ 0.33
SOX3P41225 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.13■□□□□ 0.33
SOX3P41225 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.13■□□□□ 0.33
SOX3P41225 ABALON-201ENST00000629058 1903 ntBASIC17.13■□□□□ 0.33
SOX3P41225 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SOX3P41225 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SOX3P41225 HOXB1-202ENST00000577092 1414 ntBASIC17.13■□□□□ 0.33
SOX3P41225 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.13■□□□□ 0.33
SOX3P41225 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SOX3P41225 AC012313.1-201ENST00000593393 3059 ntBASIC17.12■□□□□ 0.33
SOX3P41225 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
SOX3P41225 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
SOX3P41225 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX3P41225 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.12■□□□□ 0.33
SOX3P41225 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX3P41225 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.12■□□□□ 0.33
SOX3P41225 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX3P41225 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.12■□□□□ 0.33
SOX3P41225 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SOX3P41225 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX3P41225 KRT8P7-201ENST00000533003 1432 ntBASIC17.12■□□□□ 0.33
SOX3P41225 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SOX3P41225 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX3P41225 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 ANO7L1-203ENST00000602586 1720 ntBASIC17.11■□□□□ 0.33
SOX3P41225 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.11■□□□□ 0.33
SOX3P41225 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX3P41225 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms