Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSX2P35548 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
MSX2P35548 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.38■□□□□ 0.37
MSX2P35548 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.38■□□□□ 0.37
MSX2P35548 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
MSX2P35548 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
MSX2P35548 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.38■□□□□ 0.37
MSX2P35548 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
MSX2P35548 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 TSPY6P-201ENST00000448518 926 ntBASIC17.38■□□□□ 0.37
MSX2P35548 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.38■□□□□ 0.37
MSX2P35548 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.38■□□□□ 0.37
MSX2P35548 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.38■□□□□ 0.37
MSX2P35548 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.38■□□□□ 0.37
MSX2P35548 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
MSX2P35548 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.38■□□□□ 0.37
MSX2P35548 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MSX2P35548 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.38■□□□□ 0.37
MSX2P35548 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX2P35548 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX2P35548 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MSX2P35548 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.37■□□□□ 0.37
MSX2P35548 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
MSX2P35548 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.37■□□□□ 0.37
MSX2P35548 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.37■□□□□ 0.37
MSX2P35548 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 AC006970.2-201ENST00000450065 779 ntBASIC17.37■□□□□ 0.37
MSX2P35548 UNC93B4-201ENST00000505679 747 ntBASIC17.37■□□□□ 0.37
MSX2P35548 PRSS44-201ENST00000515154 1146 ntBASIC17.37■□□□□ 0.37
MSX2P35548 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MSX2P35548 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 AL355312.1-201ENST00000407115 2176 ntBASIC17.37■□□□□ 0.37
MSX2P35548 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.37■□□□□ 0.37
MSX2P35548 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
MSX2P35548 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
MSX2P35548 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
MSX2P35548 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSX2P35548 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
MSX2P35548 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.36■□□□□ 0.37
MSX2P35548 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.36■□□□□ 0.37
MSX2P35548 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.36■□□□□ 0.37
MSX2P35548 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
MSX2P35548 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 POM121L13P-201ENST00000422362 380 ntBASIC17.36■□□□□ 0.37
MSX2P35548 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSX2P35548 KRT18P41-201ENST00000518924 1277 ntBASIC17.36■□□□□ 0.37
MSX2P35548 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.36■□□□□ 0.37
MSX2P35548 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.36■□□□□ 0.37
MSX2P35548 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms