Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC026271.3-201ENST00000571884 352 ntBASIC20.07■□□□□ 0.8
TPM1P09493 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.07■□□□□ 0.8
TPM1P09493 AC124016.1-201ENST00000609552 612 ntBASIC20.07■□□□□ 0.8
TPM1P09493 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TPM1P09493 AL031985.4-201ENST00000642138 673 ntBASIC20.07■□□□□ 0.8
TPM1P09493 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.07■□□□□ 0.8
TPM1P09493 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TPM1P09493 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TPM1P09493 KRT16P1-201ENST00000399124 1418 ntBASIC20.07■□□□□ 0.8
TPM1P09493 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.07■□□□□ 0.8
TPM1P09493 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TPM1P09493 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TPM1P09493 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TPM1P09493 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TPM1P09493 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TPM1P09493 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TPM1P09493 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.07■□□□□ 0.8
TPM1P09493 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
TPM1P09493 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
TPM1P09493 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.06■□□□□ 0.8
TPM1P09493 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 AC133681.1-201ENST00000465482 601 ntBASIC20.06■□□□□ 0.8
TPM1P09493 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TPM1P09493 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.06■□□□□ 0.8
TPM1P09493 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TPM1P09493 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TPM1P09493 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TPM1P09493 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TPM1P09493 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TPM1P09493 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 AL355802.2-201ENST00000402069 882 ntBASIC20.05■□□□□ 0.8
TPM1P09493 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
TPM1P09493 RPS2P4-201ENST00000476944 856 ntBASIC20.05■□□□□ 0.8
TPM1P09493 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.05■□□□□ 0.8
TPM1P09493 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
TPM1P09493 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
TPM1P09493 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TPM1P09493 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.05■□□□□ 0.8
TPM1P09493 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TPM1P09493 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TPM1P09493 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TPM1P09493 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.04■□□□□ 0.8
TPM1P09493 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM1P09493 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TPM1P09493 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TPM1P09493 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM1P09493 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM1P09493 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM1P09493 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM1P09493 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM1P09493 MIR564-202ENST00000385049 94 ntBASIC20.04■□□□□ 0.8
TPM1P09493 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM1P09493 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM1P09493 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM1P09493 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.04■□□□□ 0.8
TPM1P09493 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TPM1P09493 PCDHA12-202ENST00000613593 2588 ntBASIC20.04■□□□□ 0.8
TPM1P09493 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.04■□□□□ 0.8
TPM1P09493 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.04■□□□□ 0.8
TPM1P09493 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM1P09493 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.04■□□□□ 0.8
TPM1P09493 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TPM1P09493 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.04■□□□□ 0.8
TPM1P09493 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.03■□□□□ 0.8
TPM1P09493 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TPM1P09493 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms