Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.3■□□□□ 0.52
VIMP08670 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.29■□□□□ 0.52
VIMP08670 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
VIMP08670 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.29■□□□□ 0.52
VIMP08670 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.29■□□□□ 0.52
VIMP08670 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
VIMP08670 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.29■□□□□ 0.52
VIMP08670 MIR5787-201ENST00000611784 55 ntBASIC18.29■□□□□ 0.52
VIMP08670 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VIMP08670 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.29■□□□□ 0.52
VIMP08670 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.29■□□□□ 0.52
VIMP08670 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VIMP08670 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.29■□□□□ 0.52
VIMP08670 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
VIMP08670 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 PHGDH-209ENST00000641074 1780 ntBASIC18.28■□□□□ 0.52
VIMP08670 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VIMP08670 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.28■□□□□ 0.52
VIMP08670 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.28■□□□□ 0.52
VIMP08670 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.28■□□□□ 0.52
VIMP08670 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.28■□□□□ 0.52
VIMP08670 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.28■□□□□ 0.52
VIMP08670 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.28■□□□□ 0.52
VIMP08670 AC087623.3-201ENST00000607047 1098 ntBASIC18.28■□□□□ 0.52
VIMP08670 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VIMP08670 GMCL1P1-201ENST00000463439 1581 ntBASIC18.28■□□□□ 0.52
VIMP08670 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.28■□□□□ 0.52
VIMP08670 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
VIMP08670 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
VIMP08670 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VIMP08670 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VIMP08670 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.27■□□□□ 0.52
VIMP08670 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VIMP08670 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VIMP08670 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
VIMP08670 AL391005.1-201ENST00000623953 2435 ntBASIC18.27■□□□□ 0.52
VIMP08670 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.27■□□□□ 0.52
VIMP08670 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VIMP08670 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VIMP08670 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VIMP08670 KRT18P5-201ENST00000436075 1291 ntBASIC18.27■□□□□ 0.52
VIMP08670 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.27■□□□□ 0.52
VIMP08670 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.27■□□□□ 0.52
VIMP08670 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.27■□□□□ 0.52
VIMP08670 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VIMP08670 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VIMP08670 KRT8P41-201ENST00000533985 1514 ntBASIC18.27■□□□□ 0.51
VIMP08670 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VIMP08670 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
VIMP08670 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.27■□□□□ 0.51
VIMP08670 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VIMP08670 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.26■□□□□ 0.51
VIMP08670 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms