Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.07■□□□□ 0.64
APOEP02649 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.07■□□□□ 0.64
APOEP02649 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOEP02649 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOEP02649 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOEP02649 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.07■□□□□ 0.64
APOEP02649 HLA-F-220ENST00000434407 884 ntBASIC19.07■□□□□ 0.64
APOEP02649 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
APOEP02649 VENTXP5-201ENST00000523979 775 ntBASIC19.07■□□□□ 0.64
APOEP02649 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.07■□□□□ 0.64
APOEP02649 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.07■□□□□ 0.64
APOEP02649 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.07■□□□□ 0.64
APOEP02649 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.07■□□□□ 0.64
APOEP02649 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.07■□□□□ 0.64
APOEP02649 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOEP02649 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
APOEP02649 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOEP02649 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.07■□□□□ 0.64
APOEP02649 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
APOEP02649 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.07■□□□□ 0.64
APOEP02649 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.06■□□□□ 0.64
APOEP02649 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
APOEP02649 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.06■□□□□ 0.64
APOEP02649 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
APOEP02649 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
APOEP02649 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.06■□□□□ 0.64
APOEP02649 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.06■□□□□ 0.64
APOEP02649 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.06■□□□□ 0.64
APOEP02649 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 AC073592.3-201ENST00000625118 1834 ntBASIC19.06■□□□□ 0.64
APOEP02649 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.06■□□□□ 0.64
APOEP02649 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
APOEP02649 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.06■□□□□ 0.64
APOEP02649 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.05■□□□□ 0.64
APOEP02649 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
APOEP02649 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.05■□□□□ 0.64
APOEP02649 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.05■□□□□ 0.64
APOEP02649 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.05■□□□□ 0.64
APOEP02649 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.05■□□□□ 0.64
APOEP02649 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.05■□□□□ 0.64
APOEP02649 AC126763.1-201ENST00000552015 2118 ntBASIC19.05■□□□□ 0.64
APOEP02649 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.05■□□□□ 0.64
APOEP02649 AL136038.3-201ENST00000561909 1096 ntBASIC19.05■□□□□ 0.64
APOEP02649 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
APOEP02649 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
APOEP02649 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.05■□□□□ 0.64
APOEP02649 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
APOEP02649 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
APOEP02649 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.05■□□□□ 0.64
APOEP02649 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
APOEP02649 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
APOEP02649 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
APOEP02649 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.04■□□□□ 0.64
APOEP02649 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.04■□□□□ 0.64
APOEP02649 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.04■□□□□ 0.64
APOEP02649 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.04■□□□□ 0.64
APOEP02649 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
APOEP02649 AC026471.1-201ENST00000564629 3026 ntBASIC19.04■□□□□ 0.64
APOEP02649 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.04■□□□□ 0.64
APOEP02649 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.04■□□□□ 0.64
APOEP02649 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
APOEP02649 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms