Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.93■□□□□ 0.3
PRKNO60260 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PRKNO60260 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PRKNO60260 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.93■□□□□ 0.3
PRKNO60260 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.92■□□□□ 0.3
PRKNO60260 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.92■□□□□ 0.3
PRKNO60260 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.92■□□□□ 0.3
PRKNO60260 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.92■□□□□ 0.3
PRKNO60260 TSPY22P-201ENST00000427496 604 ntBASIC16.92■□□□□ 0.3
PRKNO60260 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.92■□□□□ 0.3
PRKNO60260 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PRKNO60260 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.92■□□□□ 0.3
PRKNO60260 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PRKNO60260 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PRKNO60260 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.92■□□□□ 0.3
PRKNO60260 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PRKNO60260 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.92■□□□□ 0.3
PRKNO60260 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PRKNO60260 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PRKNO60260 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 IGHGP-201ENST00000390555 1178 ntBASIC16.91■□□□□ 0.3
PRKNO60260 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
PRKNO60260 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.91■□□□□ 0.3
PRKNO60260 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.91■□□□□ 0.3
PRKNO60260 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.91■□□□□ 0.3
PRKNO60260 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.91■□□□□ 0.3
PRKNO60260 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.91■□□□□ 0.3
PRKNO60260 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.91■□□□□ 0.3
PRKNO60260 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.91■□□□□ 0.3
PRKNO60260 AL390719.2-201ENST00000606993 987 ntBASIC16.91■□□□□ 0.3
PRKNO60260 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PRKNO60260 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.91■□□□□ 0.3
PRKNO60260 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 AC018470.1-201ENST00000624790 3129 ntBASIC16.91■□□□□ 0.3
PRKNO60260 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PRKNO60260 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PRKNO60260 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PRKNO60260 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PRKNO60260 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
PRKNO60260 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PRKNO60260 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PRKNO60260 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PRKNO60260 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PRKNO60260 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
PRKNO60260 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PRKNO60260 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
PRKNO60260 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PRKNO60260 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.9■□□□□ 0.3
PRKNO60260 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
PRKNO60260 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms