Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.54■□□□□ 0.88
COL20A1Q9P218 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL20A1Q9P218 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 MRPL3P1-201ENST00000400109 1033 ntBASIC20.53■□□□□ 0.88
COL20A1Q9P218 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 SAPCD2P3-201ENST00000455031 850 ntBASIC20.53■□□□□ 0.88
COL20A1Q9P218 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 AC112698.1-201ENST00000510299 916 ntBASIC20.53■□□□□ 0.88
COL20A1Q9P218 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 SLC25A6P4-201ENST00000586535 553 ntBASIC20.53■□□□□ 0.88
COL20A1Q9P218 TP73-AS1-207ENST00000624167 988 ntBASIC20.53■□□□□ 0.88
COL20A1Q9P218 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 AC087289.5-201ENST00000586076 3175 ntBASIC20.53■□□□□ 0.88
COL20A1Q9P218 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL20A1Q9P218 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.53■□□□□ 0.88
COL20A1Q9P218 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 AL591684.3-201ENST00000605187 298 ntBASIC20.52■□□□□ 0.88
COL20A1Q9P218 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.52■□□□□ 0.88
COL20A1Q9P218 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL20A1Q9P218 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.52■□□□□ 0.87
COL20A1Q9P218 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL20A1Q9P218 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL20A1Q9P218 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 AC132008.2-207ENST00000454517 770 ntBASIC20.51■□□□□ 0.87
COL20A1Q9P218 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 AC093010.1-201ENST00000473625 1624 ntBASIC20.51■□□□□ 0.87
COL20A1Q9P218 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
COL20A1Q9P218 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL20A1Q9P218 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
COL20A1Q9P218 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.5■□□□□ 0.87
COL20A1Q9P218 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
COL20A1Q9P218 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL20A1Q9P218 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL20A1Q9P218 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.5■□□□□ 0.87
COL20A1Q9P218 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
COL20A1Q9P218 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.5■□□□□ 0.87
COL20A1Q9P218 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL20A1Q9P218 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
COL20A1Q9P218 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL20A1Q9P218 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms