Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 CR392000.1-201ENST00000624770 1228 ntBASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SMARCAL1Q9NZC9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.21■□□□□ 0.66
SMARCAL1Q9NZC9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 SDHAP2-201ENST00000455183 2001 ntBASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCAL1Q9NZC9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 FAM207BP-201ENST00000447172 505 ntBASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 AC130371.2-201ENST00000619443 611 ntBASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 TMEM191A-211ENST00000637163 1067 ntBASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 TNRC18P3-201ENST00000441896 2691 ntBASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCAL1Q9NZC9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 AC124067.4-201ENST00000519691 2379 ntBASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 GCSHP5-201ENST00000443090 522 ntBASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 KSR1P1-201ENST00000446298 240 ntBASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCAL1Q9NZC9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms