Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AP003097.1-201ENST00000530657 1135 ntBASIC16.1■□□□□ 0.17
MMP28Q9H239 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 AC006058.3-201ENST00000606217 1069 ntBASIC16.1■□□□□ 0.17
MMP28Q9H239 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
MMP28Q9H239 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
MMP28Q9H239 REXO1L9P-201ENST00000604264 2108 ntBASIC16.1■□□□□ 0.17
MMP28Q9H239 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MMP28Q9H239 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
MMP28Q9H239 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
MMP28Q9H239 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
MMP28Q9H239 AC093677.2-201ENST00000600169 1863 ntBASIC16.1■□□□□ 0.17
MMP28Q9H239 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
MMP28Q9H239 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
MMP28Q9H239 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.09■□□□□ 0.17
MMP28Q9H239 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
MMP28Q9H239 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
MMP28Q9H239 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 AL499627.1-201ENST00000569373 2188 ntBASIC16.09■□□□□ 0.17
MMP28Q9H239 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
MMP28Q9H239 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC16.09■□□□□ 0.17
MMP28Q9H239 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
MMP28Q9H239 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.09■□□□□ 0.17
MMP28Q9H239 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MMP28Q9H239 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.08■□□□□ 0.17
MMP28Q9H239 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
MMP28Q9H239 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.08■□□□□ 0.17
MMP28Q9H239 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.08■□□□□ 0.17
MMP28Q9H239 PCDHB19P-201ENST00000570871 2371 ntBASIC16.08■□□□□ 0.17
MMP28Q9H239 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
MMP28Q9H239 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
MMP28Q9H239 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
MMP28Q9H239 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
MMP28Q9H239 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
MMP28Q9H239 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
MMP28Q9H239 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
MMP28Q9H239 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
MMP28Q9H239 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.08■□□□□ 0.16
MMP28Q9H239 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
MMP28Q9H239 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.08■□□□□ 0.16
MMP28Q9H239 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 POM121L13P-201ENST00000422362 380 ntBASIC16.08■□□□□ 0.16
MMP28Q9H239 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.08■□□□□ 0.16
MMP28Q9H239 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.08■□□□□ 0.16
MMP28Q9H239 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.08■□□□□ 0.16
MMP28Q9H239 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.08■□□□□ 0.16
MMP28Q9H239 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
MMP28Q9H239 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC16.08■□□□□ 0.16
MMP28Q9H239 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
MMP28Q9H239 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.08■□□□□ 0.16
MMP28Q9H239 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
MMP28Q9H239 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.08■□□□□ 0.16
MMP28Q9H239 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MMP28Q9H239 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.07■□□□□ 0.16
MMP28Q9H239 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.07■□□□□ 0.16
MMP28Q9H239 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.07■□□□□ 0.16
MMP28Q9H239 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MMP28Q9H239 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms