Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 AC022210.1-201ENST00000449856 793 ntBASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.31■□□□□ 0.52
COL25A1Q9BXS0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 KRT8P47-201ENST00000604727 1398 ntBASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 Z98882.1-201ENST00000622160 2253 ntBASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 KRT18P32-201ENST00000424695 1287 ntBASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 FAM58DP-201ENST00000428076 619 ntBASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 SIGLEC16-201ENST00000599858 1437 ntBASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.3■□□□□ 0.52
COL25A1Q9BXS0 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 AC004890.2-204ENST00000481968 304 ntBASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.29■□□□□ 0.52
COL25A1Q9BXS0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 AC007225.1-201ENST00000566331 1836 ntBASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 AC092919.2-201ENST00000623631 1645 ntBASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 KRT8P48-201ENST00000515599 1220 ntBASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 KRT17P8-201ENST00000540749 863 ntBASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 RAB43P1-201ENST00000561790 589 ntBASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 AC006116.8-202ENST00000587620 1550 ntBASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 AC133561.1-201ENST00000568600 2415 ntBASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL25A1Q9BXS0 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
COL25A1Q9BXS0 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms