Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 ESPNP-201ENST00000270691 2015 ntBASIC18.08■□□□□ 0.48
VPS35Q96QK1 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS35Q96QK1 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS35Q96QK1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.07■□□□□ 0.48
VPS35Q96QK1 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 PCED1CP-201ENST00000419887 785 ntBASIC18.07■□□□□ 0.48
VPS35Q96QK1 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 AP003733.1-201ENST00000491725 852 ntBASIC18.07■□□□□ 0.48
VPS35Q96QK1 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 AP000550.4-202ENST00000639755 178 ntBASIC18.07■□□□□ 0.48
VPS35Q96QK1 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS35Q96QK1 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS35Q96QK1 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 AC091076.1-201ENST00000610741 619 ntBASIC18.06■□□□□ 0.48
VPS35Q96QK1 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS35Q96QK1 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
VPS35Q96QK1 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 IGHGP-201ENST00000390555 1178 ntBASIC18.05■□□□□ 0.48
VPS35Q96QK1 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms