Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.985e-6■□□□□ 10.2
DDX55Q8NHQ9 CDK6-203ENST00000467166 779 ntTSL 28.83□□□□□ -15e-6■□□□□ 10.2
DDX55Q8NHQ9 NQO1-203ENST00000379047 2527 ntTSL 1 (best) BASIC8.76□□□□□ -1.015e-6■□□□□ 10.2
DDX55Q8NHQ9 NQO1-201ENST00000320623 2912 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.055e-6■□□□□ 10.2
DDX55Q8NHQ9 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC8.33□□□□□ -1.085e-6■□□□□ 10.2
DDX55Q8NHQ9 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.175e-6■□□□□ 10.2
DDX55Q8NHQ9 ZNF117-202ENST00000487644 1837 ntTSL 26.66□□□□□ -1.345e-6■□□□□ 10.2
DDX55Q8NHQ9 SF3B3-210ENST00000567654 334 ntTSL 36.45□□□□□ -1.385e-6■□□□□ 10.2
DDX55Q8NHQ9 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.15□□□□□ -1.425e-6■□□□□ 10.2
DDX55Q8NHQ9 ACAA2-207ENST00000591171 1850 ntTSL 26□□□□□ -1.455e-6■□□□□ 10.2
DDX55Q8NHQ9 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.485e-6■□□□□ 10.2
DDX55Q8NHQ9 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.214e-10■□□□□ 10.2
DDX55Q8NHQ9 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC14.01□□□□□ -0.174e-10■□□□□ 10.2
DDX55Q8NHQ9 MCFD2-207ENST00000409913 3975 ntTSL 1 (best) BASIC11.01□□□□□ -0.654e-10■□□□□ 10.2
DDX55Q8NHQ9 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.264e-10■□□□□ 10.2
DDX55Q8NHQ9 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.79□□□□□ -1.324e-10■□□□□ 10.2
DDX55Q8NHQ9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC23.07■■□□□ 1.283e-14■□□□□ 10.2
DDX55Q8NHQ9 OAZ1-203ENST00000586054 2832 nt22.28■■□□□ 1.163e-14■□□□□ 10.2
DDX55Q8NHQ9 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.043e-14■□□□□ 10.2
DDX55Q8NHQ9 OAZ1-206ENST00000589739 657 ntTSL 221.28■■□□□ 13e-14■□□□□ 10.2
DDX55Q8NHQ9 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.913e-14■□□□□ 10.2
DDX55Q8NHQ9 OAZ1-207ENST00000590943 1012 ntTSL 219.42■□□□□ 0.73e-14■□□□□ 10.2
DDX55Q8NHQ9 KIF22-206ENST00000565736 1568 ntTSL 221.81■■□□□ 1.083e-20■□□□□ 10.2
DDX55Q8NHQ9 KIF22-207ENST00000568312 781 ntTSL 314.45□□□□□ -0.13e-20■□□□□ 10.2
DDX55Q8NHQ9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.594e-16■□□□□ 10.2
DDX55Q8NHQ9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.291e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.941e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-204ENST00000546939 779 ntTSL 3 BASIC21.36■■□□□ 1.011e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.62■□□□□ 0.891e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-209ENST00000550050 829 ntTSL 519.52■□□□□ 0.721e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.611e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.431e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-212ENST00000552067 621 ntTSL 5 BASIC14.72□□□□□ -0.051e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-215ENST00000552754 682 ntTSL 1 (best) BASIC14.29□□□□□ -0.121e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-205ENST00000548117 499 ntTSL 214.13□□□□□ -0.151e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-207ENST00000548898 727 ntTSL 2 BASIC14.13□□□□□ -0.151e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-216ENST00000555199 230 ntTSL 212.45□□□□□ -0.421e-7■□□□□ 10.2
DDX55Q8NHQ9 CD63-206ENST00000548160 648 ntTSL 2 BASIC11.82□□□□□ -0.521e-7■□□□□ 10.2
DDX55Q8NHQ9 CALM2-206ENST00000482532 1891 ntTSL 212.92□□□□□ -0.341e-36■□□□□ 10.2
DDX55Q8NHQ9 CALM2-204ENST00000456319 703 ntTSL 26.28□□□□□ -1.41e-36■□□□□ 10.2
DDX55Q8NHQ9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.56■■□□□ 1.364e-7■□□□□ 10.2
DDX55Q8NHQ9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC23.4■■□□□ 1.342e-7■□□□□ 10.2
DDX55Q8NHQ9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.27■■□□□ 1.164e-7■□□□□ 10.2
DDX55Q8NHQ9 DMPK-210ENST00000596686 2499 ntTSL 221.73■■□□□ 1.074e-7■□□□□ 10.2
DDX55Q8NHQ9 WBP2-205ENST00000586257 676 ntTSL 321.3■■□□□ 12e-7■□□□□ 10.2
DDX55Q8NHQ9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.65■□□□□ 0.742e-7■□□□□ 10.2
DDX55Q8NHQ9 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.622e-7■□□□□ 10.2
DDX55Q8NHQ9 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.82■□□□□ 0.62e-7■□□□□ 10.2
DDX55Q8NHQ9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.564e-7■□□□□ 10.2
DDX55Q8NHQ9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.514e-7■□□□□ 10.2
DDX55Q8NHQ9 DMPK-206ENST00000588522 2920 ntTSL 517.37■□□□□ 0.374e-7■□□□□ 10.2
DDX55Q8NHQ9 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.242e-7■□□□□ 10.2
DDX55Q8NHQ9 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.03■□□□□ 0.164e-7■□□□□ 10.2
DDX55Q8NHQ9 WBP2-216ENST00000591831 1406 ntTSL 515.72■□□□□ 0.112e-7■□□□□ 10.2
DDX55Q8NHQ9 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.94□□□□□ -0.024e-7■□□□□ 10.2
DDX55Q8NHQ9 WBP2-207ENST00000587642 3718 ntTSL 29.85□□□□□ -0.832e-7■□□□□ 10.2
DDX55Q8NHQ9 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.962e-69■□□□□ 10.2
DDX55Q8NHQ9 ISYNA1-204ENST00000577916 2148 ntTSL 525.48■■□□□ 1.674e-8■□□□□ 10.2
DDX55Q8NHQ9 ISYNA1-211ENST00000582811 2039 ntTSL 222.94■■□□□ 1.264e-8■□□□□ 10.2
DDX55Q8NHQ9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.254e-8■□□□□ 10.2
DDX55Q8NHQ9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC22■■□□□ 1.114e-8■□□□□ 10.2
DDX55Q8NHQ9 ISYNA1-210ENST00000582770 1654 ntTSL 220.16■□□□□ 0.824e-8■□□□□ 10.2
DDX55Q8NHQ9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.14■□□□□ 0.814e-8■□□□□ 10.2
DDX55Q8NHQ9 ISYNA1-203ENST00000577820 1466 ntTSL 517.15■□□□□ 0.344e-8■□□□□ 10.2
DDX55Q8NHQ9 DPP7-208ENST00000478597 943 ntTSL 330.8■■■□□ 2.522e-11■□□□□ 10.2
DDX55Q8NHQ9 DPP7-211ENST00000485456 968 ntTSL 529.79■■■□□ 2.362e-11■□□□□ 10.2
DDX55Q8NHQ9 VEGFA-217ENST00000518538 535 ntTSL 226.59■■□□□ 1.852e-42■□□□□ 10.2
DDX55Q8NHQ9 DPP7-212ENST00000491807 618 ntTSL 325.59■■□□□ 1.692e-11■□□□□ 10.2
DDX55Q8NHQ9 DPP7-213ENST00000497375 817 ntTSL 521.12■□□□□ 0.972e-11■□□□□ 10.2
DDX55Q8NHQ9 DPP7-207ENST00000473703 684 ntTSL 321.01■□□□□ 0.952e-11■□□□□ 10.2
DDX55Q8NHQ9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.942e-11■□□□□ 10.2
DDX55Q8NHQ9 TNPO2-213ENST00000589149 564 ntTSL 517.46■□□□□ 0.392e-11■□□□□ 10.2
DDX55Q8NHQ9 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.91■□□□□ 0.142e-11■□□□□ 10.2
DDX55Q8NHQ9 VEGFA-216ENST00000512683 475 ntTSL 1 (best)15.75■□□□□ 0.112e-42■□□□□ 10.2
DDX55Q8NHQ9 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.132e-11■□□□□ 10.2
DDX55Q8NHQ9 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC13.9□□□□□ -0.182e-11■□□□□ 10.2
DDX55Q8NHQ9 HOXB7-203ENST00000567101 528 ntTSL 213.15□□□□□ -0.32e-11■□□□□ 10.2
DDX55Q8NHQ9 TSC22D1-201ENST00000261489 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.782e-11■□□□□ 10.2
DDX55Q8NHQ9 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC8.63□□□□□ -1.032e-11■□□□□ 10.2
DDX55Q8NHQ9 TSC22D1-213ENST00000622051 2872 ntTSL 2 BASIC8.63□□□□□ -1.032e-11■□□□□ 10.2
DDX55Q8NHQ9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.92e-8■□□□□ 10.2
DDX55Q8NHQ9 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.316e-7■□□□□ 10.2
DDX55Q8NHQ9 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.036e-7■□□□□ 10.2
DDX55Q8NHQ9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.083e-6■□□□□ 10.1
DDX55Q8NHQ9 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.121e-7■□□□□ 10.1
DDX55Q8NHQ9 CDC37-209ENST00000591248 1377 ntTSL 518.75■□□□□ 0.592e-8■□□□□ 10.1
DDX55Q8NHQ9 CDC37-205ENST00000589625 587 ntTSL 218.25■□□□□ 0.512e-8■□□□□ 10.1
DDX55Q8NHQ9 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.322e-8■□□□□ 10.1
DDX55Q8NHQ9 TCF3-206ENST00000585855 1170 ntTSL 323.53■■□□□ 1.369e-7■□□□□ 10.1
DDX55Q8NHQ9 TCF3-213ENST00000590436 1149 ntTSL 523.53■■□□□ 1.369e-7■□□□□ 10.1
DDX55Q8NHQ9 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.13■■□□□ 1.299e-7■□□□□ 10.1
DDX55Q8NHQ9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.389e-7■□□□□ 10.1
DDX55Q8NHQ9 RNA5SP389-201ENST00000362610 115 ntBASIC9.28□□□□□ -0.928e-16■□□□□ 10.1
DDX55Q8NHQ9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC32.44■■■□□ 2.782e-8■□□□□ 10.1
DDX55Q8NHQ9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC32.44■■■□□ 2.782e-8■□□□□ 10.1
DDX55Q8NHQ9 ATP6AP1-203ENST00000429585 769 ntTSL 530.73■■■□□ 2.512e-8■□□□□ 10.1
DDX55Q8NHQ9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.222e-8■□□□□ 10.1
DDX55Q8NHQ9 ATP6AP1-202ENST00000422890 867 ntTSL 524.36■■□□□ 1.492e-8■□□□□ 10.1
DDX55Q8NHQ9 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.32e-8■□□□□ 10.1
DDX55Q8NHQ9 LGALS1-204ENST00000464120 303 ntTSL 216.81■□□□□ 0.282e-8■□□□□ 10.1
Retrieved 100 of 15,504 protein–RNA pairs in 114.2 ms