Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.99■□□□□ 0.31
DEPDC4Q8N2C3 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 KRT8P45-201ENST00000414328 1447 ntBASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 FAM197Y1-201ENST00000421178 764 ntBASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
DEPDC4Q8N2C3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 FLJ13224-201ENST00000313737 1514 ntBASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 AC012317.2-201ENST00000623305 2251 ntBASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.97■□□□□ 0.31
DEPDC4Q8N2C3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 NIFKP9-201ENST00000419265 221 ntBASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 AP003071.4-201ENST00000562276 1284 ntBASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 CR392000.1-201ENST00000624770 1228 ntBASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
DEPDC4Q8N2C3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms