Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTR9Q6PD62 LINC00602-201ENST00000629776 2065 ntBASIC21.59■■□□□ 1.05
CTR9Q6PD62 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTR9Q6PD62 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTR9Q6PD62 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTR9Q6PD62 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTR9Q6PD62 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTR9Q6PD62 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTR9Q6PD62 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTR9Q6PD62 MIR3652-201ENST00000579335 131 ntBASIC21.58■■□□□ 1.05
CTR9Q6PD62 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
CTR9Q6PD62 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
CTR9Q6PD62 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CTR9Q6PD62 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CTR9Q6PD62 AC233702.3-201ENST00000578656 1387 ntBASIC21.58■■□□□ 1.04
CTR9Q6PD62 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.58■■□□□ 1.04
CTR9Q6PD62 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CTR9Q6PD62 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CTR9Q6PD62 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CTR9Q6PD62 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 LINC00167-201ENST00000530583 1419 ntBASIC21.57■■□□□ 1.04
CTR9Q6PD62 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 AC091607.1-201ENST00000490318 1060 ntBASIC21.57■■□□□ 1.04
CTR9Q6PD62 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 AP000867.3-201ENST00000524675 377 ntBASIC21.57■■□□□ 1.04
CTR9Q6PD62 KRT126P-201ENST00000549467 1181 ntBASIC21.57■■□□□ 1.04
CTR9Q6PD62 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.57■■□□□ 1.04
CTR9Q6PD62 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTR9Q6PD62 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 AP005901.3-202ENST00000581653 237 ntBASIC21.56■■□□□ 1.04
CTR9Q6PD62 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.56■■□□□ 1.04
CTR9Q6PD62 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTR9Q6PD62 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.56■■□□□ 1.04
CTR9Q6PD62 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.55■■□□□ 1.04
CTR9Q6PD62 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.55■■□□□ 1.04
CTR9Q6PD62 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.55■■□□□ 1.04
CTR9Q6PD62 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTR9Q6PD62 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.55■■□□□ 1.04
CTR9Q6PD62 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.55■■□□□ 1.04
CTR9Q6PD62 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.55■■□□□ 1.04
CTR9Q6PD62 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms