Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 AC009154.2-201ENST00000621177 724 ntBASIC19.35■□□□□ 0.69
USP41Q3LFD5 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 AL499627.1-201ENST00000569373 2188 ntBASIC19.34■□□□□ 0.69
USP41Q3LFD5 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 AC064862.7-201ENST00000604520 867 ntBASIC19.34■□□□□ 0.69
USP41Q3LFD5 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP41Q3LFD5 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
USP41Q3LFD5 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP41Q3LFD5 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP41Q3LFD5 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP41Q3LFD5 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
USP41Q3LFD5 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP41Q3LFD5 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USP41Q3LFD5 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 AL022342.1-201ENST00000400363 863 ntBASIC19.33■□□□□ 0.68
USP41Q3LFD5 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.33■□□□□ 0.68
USP41Q3LFD5 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.33■□□□□ 0.68
USP41Q3LFD5 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
USP41Q3LFD5 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.33■□□□□ 0.68
USP41Q3LFD5 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.33■□□□□ 0.68
USP41Q3LFD5 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.33■□□□□ 0.68
USP41Q3LFD5 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.33■□□□□ 0.68
USP41Q3LFD5 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.33■□□□□ 0.68
USP41Q3LFD5 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP41Q3LFD5 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 AC005336.2-201ENST00000593183 939 ntBASIC19.32■□□□□ 0.68
USP41Q3LFD5 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.32■□□□□ 0.68
USP41Q3LFD5 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP41Q3LFD5 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms