Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 SPTSSB-204ENST00000617024 1292 ntBASIC13.09□□□□□ -0.31
PRKDCP78527 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
PRKDCP78527 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
PRKDCP78527 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC13.08□□□□□ -0.31
PRKDCP78527 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
PRKDCP78527 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.08□□□□□ -0.31
PRKDCP78527 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
PRKDCP78527 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
PRKDCP78527 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.08□□□□□ -0.31
PRKDCP78527 NOP2-211ENST00000540228 668 ntTSL 2 BASIC13.08□□□□□ -0.31
PRKDCP78527 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.08□□□□□ -0.31
PRKDCP78527 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 Z98044.1-201ENST00000632503 1764 ntBASIC13.08□□□□□ -0.32
PRKDCP78527 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.08□□□□□ -0.32
PRKDCP78527 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.08□□□□□ -0.32
PRKDCP78527 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC13.08□□□□□ -0.32
PRKDCP78527 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.08□□□□□ -0.32
PRKDCP78527 AC004877.2-201ENST00000623941 599 ntBASIC13.08□□□□□ -0.32
PRKDCP78527 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
PRKDCP78527 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
PRKDCP78527 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 ADK-206ENST00000541550 2222 ntTSL 2 BASIC13.08□□□□□ -0.32
PRKDCP78527 SLC25A6P5-201ENST00000435663 894 ntBASIC13.07□□□□□ -0.32
PRKDCP78527 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.07□□□□□ -0.32
PRKDCP78527 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.07□□□□□ -0.32
PRKDCP78527 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.07□□□□□ -0.32
PRKDCP78527 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.07□□□□□ -0.32
PRKDCP78527 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
PRKDCP78527 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13.07□□□□□ -0.32
PRKDCP78527 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 FAM86GP-201ENST00000448322 971 ntBASIC13.07□□□□□ -0.32
PRKDCP78527 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC13.07□□□□□ -0.32
PRKDCP78527 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC13.07□□□□□ -0.32
PRKDCP78527 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC13.07□□□□□ -0.32
PRKDCP78527 GOLGA6L11P-201ENST00000417252 1298 ntBASIC13.07□□□□□ -0.32
PRKDCP78527 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.07□□□□□ -0.32
PRKDCP78527 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC13.07□□□□□ -0.32
PRKDCP78527 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.07□□□□□ -0.32
PRKDCP78527 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
PRKDCP78527 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC13.07□□□□□ -0.32
PRKDCP78527 MIR943-201ENST00000401286 94 ntBASIC13.07□□□□□ -0.32
PRKDCP78527 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.07□□□□□ -0.32
PRKDCP78527 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.07□□□□□ -0.32
PRKDCP78527 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.07□□□□□ -0.32
PRKDCP78527 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.07□□□□□ -0.32
PRKDCP78527 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
PRKDCP78527 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
PRKDCP78527 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.07□□□□□ -0.32
PRKDCP78527 CYB561-217ENST00000582997 877 ntTSL 5 BASIC13.07□□□□□ -0.32
PRKDCP78527 AC009093.7-201ENST00000623853 1223 ntBASIC13.07□□□□□ -0.32
PRKDCP78527 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.06□□□□□ -0.32
PRKDCP78527 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.06□□□□□ -0.32
PRKDCP78527 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.06□□□□□ -0.32
PRKDCP78527 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
PRKDCP78527 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.06□□□□□ -0.32
PRKDCP78527 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC13.06□□□□□ -0.32
PRKDCP78527 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.06□□□□□ -0.32
PRKDCP78527 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.06□□□□□ -0.32
PRKDCP78527 AC025678.2-201ENST00000562061 970 ntBASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms