Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
RNF4P78317 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.85■□□□□ 0.29
RNF4P78317 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.84■□□□□ 0.29
RNF4P78317 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
RNF4P78317 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.84■□□□□ 0.29
RNF4P78317 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.84■□□□□ 0.29
RNF4P78317 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.84■□□□□ 0.29
RNF4P78317 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.84■□□□□ 0.29
RNF4P78317 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.84■□□□□ 0.29
RNF4P78317 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.84■□□□□ 0.29
RNF4P78317 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.84■□□□□ 0.29
RNF4P78317 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.84■□□□□ 0.29
RNF4P78317 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
RNF4P78317 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RNF4P78317 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.84■□□□□ 0.29
RNF4P78317 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.84■□□□□ 0.29
RNF4P78317 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
RNF4P78317 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RNF4P78317 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RNF4P78317 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
RNF4P78317 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
RNF4P78317 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RNF4P78317 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
RNF4P78317 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.83■□□□□ 0.28
RNF4P78317 HCG11-201ENST00000411553 5696 ntBASIC16.83■□□□□ 0.28
RNF4P78317 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.83■□□□□ 0.28
RNF4P78317 CHCHD2P8-201ENST00000429873 447 ntBASIC16.83■□□□□ 0.28
RNF4P78317 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.83■□□□□ 0.28
RNF4P78317 LETM1P2-201ENST00000597330 2178 ntBASIC16.83■□□□□ 0.28
RNF4P78317 AC090164.3-201ENST00000610780 2143 ntBASIC16.83■□□□□ 0.28
RNF4P78317 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.83■□□□□ 0.28
RNF4P78317 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
RNF4P78317 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
RNF4P78317 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF4P78317 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.82■□□□□ 0.28
RNF4P78317 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.82■□□□□ 0.28
RNF4P78317 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.82■□□□□ 0.28
RNF4P78317 ATP5G2P1-201ENST00000433580 426 ntBASIC16.82■□□□□ 0.28
RNF4P78317 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.82■□□□□ 0.28
RNF4P78317 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.82■□□□□ 0.28
RNF4P78317 AC090616.6-201ENST00000582640 721 ntBASIC16.82■□□□□ 0.28
RNF4P78317 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.82■□□□□ 0.28
RNF4P78317 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 AC020763.4-201ENST00000623414 4170 ntBASIC16.82■□□□□ 0.28
RNF4P78317 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
RNF4P78317 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF4P78317 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RNF4P78317 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms