Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.98■□□□□ 0.63
CDH6P55285 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.98■□□□□ 0.63
CDH6P55285 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDH6P55285 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDH6P55285 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDH6P55285 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CDH6P55285 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDH6P55285 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.98■□□□□ 0.63
CDH6P55285 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.97■□□□□ 0.63
CDH6P55285 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 AL024508.2-201ENST00000607749 1894 ntBASIC18.97■□□□□ 0.63
CDH6P55285 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 AC068880.1-201ENST00000507289 2297 ntBASIC18.97■□□□□ 0.63
CDH6P55285 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CDH6P55285 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.97■□□□□ 0.63
CDH6P55285 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 AC005363.2-201ENST00000618631 242 ntBASIC18.97■□□□□ 0.63
CDH6P55285 AL138966.2-201ENST00000621997 464 ntBASIC18.97■□□□□ 0.63
CDH6P55285 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
CDH6P55285 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.97■□□□□ 0.63
CDH6P55285 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
CDH6P55285 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
CDH6P55285 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.97■□□□□ 0.63
CDH6P55285 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CDH6P55285 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH6P55285 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.96■□□□□ 0.63
CDH6P55285 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH6P55285 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH6P55285 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH6P55285 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH6P55285 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.96■□□□□ 0.63
CDH6P55285 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH6P55285 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.96■□□□□ 0.63
CDH6P55285 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CDH6P55285 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.96■□□□□ 0.63
CDH6P55285 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
CDH6P55285 AC113347.1-201ENST00000413321 391 ntBASIC18.96■□□□□ 0.63
CDH6P55285 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.96■□□□□ 0.63
CDH6P55285 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.96■□□□□ 0.63
CDH6P55285 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CDH6P55285 AC010203.1-204ENST00000548782 407 ntBASIC18.96■□□□□ 0.63
CDH6P55285 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.96■□□□□ 0.63
CDH6P55285 MIR3917-201ENST00000580971 93 ntBASIC18.96■□□□□ 0.63
CDH6P55285 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.96■□□□□ 0.63
CDH6P55285 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH6P55285 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH6P55285 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.96■□□□□ 0.63
CDH6P55285 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.96■□□□□ 0.63
CDH6P55285 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CDH6P55285 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH6P55285 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH6P55285 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CDH6P55285 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH6P55285 LIN28AP1-201ENST00000429574 405 ntBASIC18.95■□□□□ 0.62
CDH6P55285 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH6P55285 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.95■□□□□ 0.62
CDH6P55285 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH6P55285 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.95■□□□□ 0.62
CDH6P55285 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH6P55285 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.95■□□□□ 0.62
CDH6P55285 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH6P55285 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH6P55285 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 AC008764.6-201ENST00000595909 2069 ntBASIC18.94■□□□□ 0.62
CDH6P55285 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH6P55285 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDH6P55285 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDH6P55285 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms