Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MSH6P52701 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH6P52701 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MSH6P52701 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
MSH6P52701 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH6P52701 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC25.11■■□□□ 1.61
MSH6P52701 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH6P52701 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH6P52701 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC25.11■■□□□ 1.61
MSH6P52701 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC25.11■■□□□ 1.61
MSH6P52701 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC25.11■■□□□ 1.61
MSH6P52701 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC25.11■■□□□ 1.61
MSH6P52701 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC25.11■■□□□ 1.61
MSH6P52701 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC25.11■■□□□ 1.61
MSH6P52701 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC25.11■■□□□ 1.61
MSH6P52701 AC018845.2-201ENST00000568326 409 ntBASIC25.11■■□□□ 1.61
MSH6P52701 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC25.11■■□□□ 1.61
MSH6P52701 AL513190.1-201ENST00000621254 727 ntBASIC25.11■■□□□ 1.61
MSH6P52701 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC25.11■■□□□ 1.61
MSH6P52701 AC073592.4-201ENST00000623827 446 ntBASIC25.11■■□□□ 1.61
MSH6P52701 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH6P52701 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH6P52701 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
MSH6P52701 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC25.11■■□□□ 1.61
MSH6P52701 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH6P52701 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC25.1■■□□□ 1.61
MSH6P52701 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
MSH6P52701 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH6P52701 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC25.1■■□□□ 1.61
MSH6P52701 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH6P52701 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH6P52701 CRYGEP-201ENST00000412192 528 ntBASIC25.1■■□□□ 1.61
MSH6P52701 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
MSH6P52701 ATP6V0CP3-201ENST00000417255 467 ntBASIC25.1■■□□□ 1.61
MSH6P52701 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC25.1■■□□□ 1.61
MSH6P52701 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH6P52701 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH6P52701 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH6P52701 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
MSH6P52701 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
MSH6P52701 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH6P52701 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC25.1■■□□□ 1.61
MSH6P52701 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC25.09■■□□□ 1.61
MSH6P52701 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 PNKD-204ENST00000436005 978 ntTSL 5 BASIC25.09■■□□□ 1.61
MSH6P52701 PRSS29P-201ENST00000440800 595 ntBASIC25.09■■□□□ 1.61
MSH6P52701 PAWRP1-201ENST00000451083 565 ntBASIC25.09■■□□□ 1.61
MSH6P52701 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC25.09■■□□□ 1.61
MSH6P52701 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
MSH6P52701 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC25.09■■□□□ 1.61
MSH6P52701 PUS1-205ENST00000535067 838 ntTSL 3 BASIC25.09■■□□□ 1.61
MSH6P52701 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC25.09■■□□□ 1.61
MSH6P52701 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC25.09■■□□□ 1.61
MSH6P52701 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC25.09■■□□□ 1.61
MSH6P52701 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH6P52701 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC25.09■■□□□ 1.61
MSH6P52701 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
MSH6P52701 AC125437.2-201ENST00000625180 2167 ntBASIC25.09■■□□□ 1.61
MSH6P52701 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC25.09■■□□□ 1.61
MSH6P52701 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
MSH6P52701 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
MSH6P52701 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
MSH6P52701 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC25.08■■□□□ 1.61
MSH6P52701 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC25.08■■□□□ 1.61
MSH6P52701 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
MSH6P52701 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC25.08■■□□□ 1.61
MSH6P52701 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC25.08■■□□□ 1.61
MSH6P52701 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH6P52701 GPR89P-201ENST00000407924 1495 ntBASIC25.08■■□□□ 1.61
MSH6P52701 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH6P52701 NFYC-AS1-201ENST00000606277 1687 ntBASIC25.08■■□□□ 1.61
MSH6P52701 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
MSH6P52701 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
MSH6P52701 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
MSH6P52701 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH6P52701 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH6P52701 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH6P52701 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC25.07■■□□□ 1.6
MSH6P52701 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH6P52701 KRT18P65-201ENST00000439811 1286 ntBASIC25.07■■□□□ 1.6
MSH6P52701 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC25.07■■□□□ 1.6
MSH6P52701 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH6P52701 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH6P52701 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MSH6P52701 PCDHAC2-203ENST00000615316 3011 ntBASIC25.07■■□□□ 1.6
MSH6P52701 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
MSH6P52701 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC25.07■■□□□ 1.6
MSH6P52701 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC25.07■■□□□ 1.6
MSH6P52701 PWWP2AP1-201ENST00000429776 2273 ntBASIC25.07■■□□□ 1.6
MSH6P52701 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH6P52701 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms