Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LIG3P49916 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.16■□□□□ 0.66
LIG3P49916 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.16■□□□□ 0.66
LIG3P49916 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 KRT8P11-201ENST00000409686 1436 ntBASIC19.16■□□□□ 0.66
LIG3P49916 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.16■□□□□ 0.66
LIG3P49916 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIG3P49916 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.15■□□□□ 0.66
LIG3P49916 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
LIG3P49916 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.15■□□□□ 0.66
LIG3P49916 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.15■□□□□ 0.66
LIG3P49916 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.15■□□□□ 0.66
LIG3P49916 EGLN1P1-201ENST00000531623 762 ntBASIC19.15■□□□□ 0.66
LIG3P49916 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.15■□□□□ 0.66
LIG3P49916 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.15■□□□□ 0.66
LIG3P49916 CKBP1-201ENST00000565489 1086 ntBASIC19.15■□□□□ 0.66
LIG3P49916 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
LIG3P49916 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.15■□□□□ 0.66
LIG3P49916 KRT18P22-201ENST00000402024 1347 ntBASIC19.15■□□□□ 0.66
LIG3P49916 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LIG3P49916 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.15■□□□□ 0.66
LIG3P49916 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.15■□□□□ 0.66
LIG3P49916 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIG3P49916 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIG3P49916 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIG3P49916 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIG3P49916 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIG3P49916 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIG3P49916 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
LIG3P49916 AL512353.2-201ENST00000448759 1962 ntBASIC19.14■□□□□ 0.65
LIG3P49916 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 TSPY14P-201ENST00000303979 915 ntBASIC19.14■□□□□ 0.65
LIG3P49916 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LIG3P49916 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.14■□□□□ 0.65
LIG3P49916 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.14■□□□□ 0.65
LIG3P49916 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LIG3P49916 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.14■□□□□ 0.65
LIG3P49916 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.14■□□□□ 0.65
LIG3P49916 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LIG3P49916 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.65
LIG3P49916 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
LIG3P49916 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIG3P49916 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.14■□□□□ 0.65
LIG3P49916 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIG3P49916 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIG3P49916 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
LIG3P49916 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIG3P49916 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
LIG3P49916 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.13■□□□□ 0.65
LIG3P49916 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIG3P49916 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.13■□□□□ 0.65
LIG3P49916 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
LIG3P49916 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.13■□□□□ 0.65
LIG3P49916 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.13■□□□□ 0.65
LIG3P49916 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.13■□□□□ 0.65
LIG3P49916 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIG3P49916 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.13■□□□□ 0.65
LIG3P49916 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.13■□□□□ 0.65
LIG3P49916 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.13■□□□□ 0.65
LIG3P49916 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.13■□□□□ 0.65
LIG3P49916 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.13■□□□□ 0.65
LIG3P49916 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIG3P49916 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LIG3P49916 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms