Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CXCL1P09341 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.15□□□□□ -0.14
CXCL1P09341 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC14.15□□□□□ -0.14
CXCL1P09341 MIR638-201ENST00000385237 100 ntBASIC14.15□□□□□ -0.14
CXCL1P09341 AL512625.2-201ENST00000417533 625 ntBASIC14.15□□□□□ -0.14
CXCL1P09341 AL355472.2-201ENST00000422958 438 ntBASIC14.15□□□□□ -0.14
CXCL1P09341 AC034268.1-201ENST00000441047 882 ntBASIC14.15□□□□□ -0.14
CXCL1P09341 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC14.15□□□□□ -0.14
CXCL1P09341 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC14.15□□□□□ -0.14
CXCL1P09341 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC14.15□□□□□ -0.14
CXCL1P09341 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC14.15□□□□□ -0.14
CXCL1P09341 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 BID-214ENST00000617586 542 ntTSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.15□□□□□ -0.14
CXCL1P09341 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CXCL1P09341 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
CXCL1P09341 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.14□□□□□ -0.15
CXCL1P09341 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.14□□□□□ -0.15
CXCL1P09341 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
CXCL1P09341 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.14□□□□□ -0.15
CXCL1P09341 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CXCL1P09341 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.14□□□□□ -0.15
CXCL1P09341 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CXCL1P09341 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.14□□□□□ -0.15
CXCL1P09341 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC14.14□□□□□ -0.15
CXCL1P09341 SERP1-205ENST00000487153 657 ntTSL 4 BASIC14.14□□□□□ -0.15
CXCL1P09341 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC14.14□□□□□ -0.15
CXCL1P09341 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 AC137761.2-201ENST00000561729 223 ntBASIC14.14□□□□□ -0.15
CXCL1P09341 AC145350.3-201ENST00000569033 163 ntBASIC14.14□□□□□ -0.15
CXCL1P09341 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC14.14□□□□□ -0.15
CXCL1P09341 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC14.14□□□□□ -0.15
CXCL1P09341 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CXCL1P09341 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC14.14□□□□□ -0.15
CXCL1P09341 AC231657.2-201ENST00000624556 255 ntBASIC14.14□□□□□ -0.15
CXCL1P09341 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CXCL1P09341 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CXCL1P09341 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CXCL1P09341 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CXCL1P09341 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.14□□□□□ -0.15
CXCL1P09341 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CXCL1P09341 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.14□□□□□ -0.15
CXCL1P09341 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.14□□□□□ -0.15
CXCL1P09341 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.14□□□□□ -0.15
CXCL1P09341 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.14□□□□□ -0.15
CXCL1P09341 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CXCL1P09341 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.14□□□□□ -0.15
CXCL1P09341 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms