Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.72■□□□□ 0.43
HOXC4P09017 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 AC104692.2-201ENST00000603054 253 ntBASIC17.72■□□□□ 0.43
HOXC4P09017 REXO1L6P-202ENST00000619970 1078 ntBASIC17.72■□□□□ 0.43
HOXC4P09017 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
HOXC4P09017 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 AC022898.2-201ENST00000616822 1312 ntBASIC17.72■□□□□ 0.43
HOXC4P09017 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.71■□□□□ 0.43
HOXC4P09017 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
HOXC4P09017 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
HOXC4P09017 RCN1P2-201ENST00000398357 915 ntBASIC17.71■□□□□ 0.43
HOXC4P09017 SAPCD2P3-201ENST00000455031 850 ntBASIC17.71■□□□□ 0.43
HOXC4P09017 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.71■□□□□ 0.43
HOXC4P09017 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.71■□□□□ 0.43
HOXC4P09017 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.71■□□□□ 0.43
HOXC4P09017 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.71■□□□□ 0.43
HOXC4P09017 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HOXC4P09017 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.71■□□□□ 0.43
HOXC4P09017 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HOXC4P09017 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.71■□□□□ 0.43
HOXC4P09017 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HOXC4P09017 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.42
HOXC4P09017 TNXA-203ENST00000507684 2038 ntBASIC17.71■□□□□ 0.42
HOXC4P09017 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HOXC4P09017 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.71■□□□□ 0.42
HOXC4P09017 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.7■□□□□ 0.42
HOXC4P09017 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC4P09017 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
HOXC4P09017 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.7■□□□□ 0.42
HOXC4P09017 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
HOXC4P09017 AL160237.2-201ENST00000556165 472 ntBASIC17.7■□□□□ 0.42
HOXC4P09017 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.7■□□□□ 0.42
HOXC4P09017 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.7■□□□□ 0.42
HOXC4P09017 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.7■□□□□ 0.42
HOXC4P09017 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC4P09017 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC4P09017 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC4P09017 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.7■□□□□ 0.42
HOXC4P09017 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 WIZP1-201ENST00000531444 2299 ntBASIC17.7■□□□□ 0.42
HOXC4P09017 INTS4P1-201ENST00000438455 1935 ntBASIC17.7■□□□□ 0.42
HOXC4P09017 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC4P09017 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXC4P09017 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXC4P09017 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HOXC4P09017 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 AKR1C7P-201ENST00000305623 895 ntBASIC17.69■□□□□ 0.42
HOXC4P09017 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.69■□□□□ 0.42
HOXC4P09017 AC096633.1-201ENST00000422446 749 ntBASIC17.69■□□□□ 0.42
HOXC4P09017 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.69■□□□□ 0.42
HOXC4P09017 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
HOXC4P09017 AL121912.1-201ENST00000603683 238 ntBASIC17.69■□□□□ 0.42
HOXC4P09017 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.69■□□□□ 0.42
HOXC4P09017 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXC4P09017 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HOXC4P09017 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.69■□□□□ 0.42
HOXC4P09017 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HOXC4P09017 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC4P09017 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms