Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VIMP08670 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.32■□□□□ 0.52
VIMP08670 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
VIMP08670 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.32■□□□□ 0.52
VIMP08670 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.32■□□□□ 0.52
VIMP08670 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.32■□□□□ 0.52
VIMP08670 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.32■□□□□ 0.52
VIMP08670 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
VIMP08670 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
VIMP08670 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.32■□□□□ 0.52
VIMP08670 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.32■□□□□ 0.52
VIMP08670 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VIMP08670 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
VIMP08670 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.31■□□□□ 0.52
VIMP08670 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VIMP08670 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.31■□□□□ 0.52
VIMP08670 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
VIMP08670 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.31■□□□□ 0.52
VIMP08670 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.31■□□□□ 0.52
VIMP08670 UBALD1-205ENST00000590891 2641 ntBASIC18.31■□□□□ 0.52
VIMP08670 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.31■□□□□ 0.52
VIMP08670 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.31■□□□□ 0.52
VIMP08670 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
VIMP08670 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.31■□□□□ 0.52
VIMP08670 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VIMP08670 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.31■□□□□ 0.52
VIMP08670 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
VIMP08670 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VIMP08670 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.31■□□□□ 0.52
VIMP08670 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VIMP08670 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 AC046158.3-201ENST00000624947 2558 ntBASIC18.31■□□□□ 0.52
VIMP08670 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VIMP08670 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VIMP08670 AL121761.2-201ENST00000598007 1648 ntBASIC18.31■□□□□ 0.52
VIMP08670 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VIMP08670 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.3■□□□□ 0.52
VIMP08670 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.3■□□□□ 0.52
VIMP08670 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.3■□□□□ 0.52
VIMP08670 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VIMP08670 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VIMP08670 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.3■□□□□ 0.52
VIMP08670 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.3■□□□□ 0.52
VIMP08670 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.3■□□□□ 0.52
VIMP08670 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.3■□□□□ 0.52
VIMP08670 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.3■□□□□ 0.52
VIMP08670 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VIMP08670 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
VIMP08670 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VIMP08670 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
VIMP08670 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VIMP08670 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VIMP08670 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VIMP08670 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms