Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
MBD3O95983 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
MBD3O95983 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
MBD3O95983 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MBD3O95983 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
MBD3O95983 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.91■□□□□ 0.94
MBD3O95983 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.91■□□□□ 0.94
MBD3O95983 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
MBD3O95983 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.91■□□□□ 0.94
MBD3O95983 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.91■□□□□ 0.94
MBD3O95983 AC098934.4-201ENST00000564127 592 ntBASIC20.91■□□□□ 0.94
MBD3O95983 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
MBD3O95983 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.91■□□□□ 0.94
MBD3O95983 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
MBD3O95983 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
MBD3O95983 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MBD3O95983 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
MBD3O95983 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
MBD3O95983 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
MBD3O95983 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 SDHAP2-201ENST00000455183 2001 ntBASIC20.9■□□□□ 0.94
MBD3O95983 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.9■□□□□ 0.94
MBD3O95983 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.9■□□□□ 0.94
MBD3O95983 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.9■□□□□ 0.94
MBD3O95983 AC004951.3-201ENST00000418645 1148 ntBASIC20.9■□□□□ 0.94
MBD3O95983 NCF1B-203ENST00000435988 1254 ntBASIC20.9■□□□□ 0.94
MBD3O95983 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.9■□□□□ 0.94
MBD3O95983 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
MBD3O95983 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.9■□□□□ 0.94
MBD3O95983 MTDHP1-201ENST00000605323 784 ntBASIC20.9■□□□□ 0.94
MBD3O95983 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.9■□□□□ 0.94
MBD3O95983 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
MBD3O95983 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.9■□□□□ 0.94
MBD3O95983 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
MBD3O95983 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
MBD3O95983 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MBD3O95983 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC20.9■□□□□ 0.94
MBD3O95983 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.89■□□□□ 0.94
MBD3O95983 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
MBD3O95983 AL355312.1-201ENST00000407115 2176 ntBASIC20.89■□□□□ 0.94
MBD3O95983 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD3O95983 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD3O95983 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.89■□□□□ 0.93
MBD3O95983 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD3O95983 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
MBD3O95983 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.93
MBD3O95983 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.89■□□□□ 0.93
MBD3O95983 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.89■□□□□ 0.93
MBD3O95983 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.89■□□□□ 0.93
MBD3O95983 AL138781.1-201ENST00000566567 1274 ntBASIC20.89■□□□□ 0.93
MBD3O95983 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD3O95983 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
MBD3O95983 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD3O95983 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.89■□□□□ 0.93
MBD3O95983 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD3O95983 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
MBD3O95983 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MBD3O95983 AC009102.3-201ENST00000623118 1491 ntBASIC20.88■□□□□ 0.93
MBD3O95983 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
MBD3O95983 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD3O95983 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.88■□□□□ 0.93
MBD3O95983 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD3O95983 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD3O95983 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.88■□□□□ 0.93
MBD3O95983 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
MBD3O95983 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
MBD3O95983 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
MBD3O95983 NIFKP9-201ENST00000419265 221 ntBASIC20.88■□□□□ 0.93
MBD3O95983 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms