Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SDC3O75056 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SDC3O75056 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.79■□□□□ 0.44
SDC3O75056 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDC3O75056 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.79■□□□□ 0.44
SDC3O75056 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 AL024508.2-201ENST00000607749 1894 ntBASIC17.78■□□□□ 0.44
SDC3O75056 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 RCN1P2-201ENST00000398357 915 ntBASIC17.78■□□□□ 0.44
SDC3O75056 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.78■□□□□ 0.44
SDC3O75056 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SDC3O75056 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.78■□□□□ 0.44
SDC3O75056 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.78■□□□□ 0.44
SDC3O75056 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.78■□□□□ 0.44
SDC3O75056 AC005336.2-201ENST00000593183 939 ntBASIC17.78■□□□□ 0.44
SDC3O75056 AC064862.7-201ENST00000604520 867 ntBASIC17.78■□□□□ 0.44
SDC3O75056 AC008608.2-201ENST00000606089 416 ntBASIC17.78■□□□□ 0.44
SDC3O75056 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.78■□□□□ 0.44
SDC3O75056 BX640515.1-201ENST00000617215 977 ntBASIC17.78■□□□□ 0.44
SDC3O75056 AL773604.1-201ENST00000617417 272 ntBASIC17.78■□□□□ 0.44
SDC3O75056 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.78■□□□□ 0.44
SDC3O75056 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.78■□□□□ 0.44
SDC3O75056 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
SDC3O75056 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.78■□□□□ 0.44
SDC3O75056 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDC3O75056 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SDC3O75056 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SDC3O75056 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.77■□□□□ 0.44
SDC3O75056 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SDC3O75056 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.77■□□□□ 0.44
SDC3O75056 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 AC113404.2-201ENST00000507884 177 ntBASIC17.77■□□□□ 0.44
SDC3O75056 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SDC3O75056 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 AF228730.7-201ENST00000641842 219 ntBASIC17.77■□□□□ 0.44
SDC3O75056 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SDC3O75056 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SDC3O75056 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.77■□□□□ 0.44
SDC3O75056 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.77■□□□□ 0.43
SDC3O75056 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SDC3O75056 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SDC3O75056 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SDC3O75056 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SDC3O75056 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SDC3O75056 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SDC3O75056 LINC00602-201ENST00000629776 2065 ntBASIC17.76■□□□□ 0.43
SDC3O75056 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SDC3O75056 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 IL9RP2-201ENST00000423948 1312 ntBASIC17.76■□□□□ 0.43
SDC3O75056 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.76■□□□□ 0.43
SDC3O75056 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDC3O75056 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.76■□□□□ 0.43
SDC3O75056 AC068472.1-201ENST00000474589 881 ntBASIC17.76■□□□□ 0.43
SDC3O75056 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 RNA5SP419-201ENST00000515908 135 ntBASIC17.76■□□□□ 0.43
SDC3O75056 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.76■□□□□ 0.43
SDC3O75056 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.76■□□□□ 0.43
SDC3O75056 AC008687.5-201ENST00000593746 558 ntBASIC17.76■□□□□ 0.43
SDC3O75056 AL671883.3-201ENST00000603274 991 ntBASIC17.76■□□□□ 0.43
SDC3O75056 GPALPP1-207ENST00000611650 899 ntBASIC17.76■□□□□ 0.43
SDC3O75056 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SDC3O75056 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.76■□□□□ 0.43
SDC3O75056 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms