Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.25■□□□□ 0.51
SHOX2O60902 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 AC005829.2-201ENST00000571422 1056 ntBASIC18.25■□□□□ 0.51
SHOX2O60902 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.25■□□□□ 0.51
SHOX2O60902 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.25■□□□□ 0.51
SHOX2O60902 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SHOX2O60902 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 AC022188.1-201ENST00000620960 1664 ntBASIC18.25■□□□□ 0.51
SHOX2O60902 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.24■□□□□ 0.51
SHOX2O60902 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
SHOX2O60902 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.24■□□□□ 0.51
SHOX2O60902 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
SHOX2O60902 AL390719.1-204ENST00000412397 1219 ntBASIC18.24■□□□□ 0.51
SHOX2O60902 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.24■□□□□ 0.51
SHOX2O60902 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.24■□□□□ 0.51
SHOX2O60902 AL160286.2-201ENST00000567150 934 ntBASIC18.24■□□□□ 0.51
SHOX2O60902 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.24■□□□□ 0.51
SHOX2O60902 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.24■□□□□ 0.51
SHOX2O60902 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.24■□□□□ 0.51
SHOX2O60902 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SHOX2O60902 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.24■□□□□ 0.51
SHOX2O60902 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHOX2O60902 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SHOX2O60902 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.24■□□□□ 0.51
SHOX2O60902 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHOX2O60902 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SHOX2O60902 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.23■□□□□ 0.51
SHOX2O60902 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.23■□□□□ 0.51
SHOX2O60902 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.23■□□□□ 0.51
SHOX2O60902 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.23■□□□□ 0.51
SHOX2O60902 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHOX2O60902 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.23■□□□□ 0.51
SHOX2O60902 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.23■□□□□ 0.51
SHOX2O60902 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.23■□□□□ 0.51
SHOX2O60902 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.23■□□□□ 0.51
SHOX2O60902 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
SHOX2O60902 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SHOX2O60902 RPS2P52-201ENST00000469610 820 ntBASIC18.23■□□□□ 0.51
SHOX2O60902 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.23■□□□□ 0.51
SHOX2O60902 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.23■□□□□ 0.51
SHOX2O60902 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
SHOX2O60902 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOX2O60902 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.22■□□□□ 0.51
SHOX2O60902 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SHOX2O60902 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SHOX2O60902 AC060834.1-201ENST00000443027 2032 ntBASIC18.22■□□□□ 0.51
SHOX2O60902 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOX2O60902 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.22■□□□□ 0.51
SHOX2O60902 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.22■□□□□ 0.51
SHOX2O60902 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.22■□□□□ 0.51
SHOX2O60902 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SHOX2O60902 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms