Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1BO60663 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.04■□□□□ 0.16
LMX1BO60663 MFAP1P1-201ENST00000442257 1255 ntBASIC16.04■□□□□ 0.16
LMX1BO60663 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1BO60663 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.04■□□□□ 0.16
LMX1BO60663 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
LMX1BO60663 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 AC139887.4-201ENST00000607877 719 ntBASIC16.04■□□□□ 0.16
LMX1BO60663 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.04■□□□□ 0.16
LMX1BO60663 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.04■□□□□ 0.16
LMX1BO60663 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.04■□□□□ 0.16
LMX1BO60663 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LMX1BO60663 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LMX1BO60663 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LMX1BO60663 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 AC134043.2-201ENST00000624206 2238 ntBASIC16.03■□□□□ 0.16
LMX1BO60663 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.03■□□□□ 0.16
LMX1BO60663 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.03■□□□□ 0.16
LMX1BO60663 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.03■□□□□ 0.16
LMX1BO60663 TSPY5P-201ENST00000426936 936 ntBASIC16.03■□□□□ 0.16
LMX1BO60663 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.03■□□□□ 0.16
LMX1BO60663 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.03■□□□□ 0.16
LMX1BO60663 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.03■□□□□ 0.16
LMX1BO60663 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.03■□□□□ 0.16
LMX1BO60663 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LMX1BO60663 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 AC138028.4-201ENST00000564984 1845 ntBASIC16.03■□□□□ 0.16
LMX1BO60663 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.03■□□□□ 0.16
LMX1BO60663 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.03■□□□□ 0.16
LMX1BO60663 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LMX1BO60663 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
LMX1BO60663 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.02■□□□□ 0.16
LMX1BO60663 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.02■□□□□ 0.16
LMX1BO60663 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
LMX1BO60663 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.02■□□□□ 0.16
LMX1BO60663 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
LMX1BO60663 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.02■□□□□ 0.16
LMX1BO60663 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.02■□□□□ 0.16
LMX1BO60663 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
LMX1BO60663 SLC25A1P2-201ENST00000430693 912 ntBASIC16.02■□□□□ 0.16
LMX1BO60663 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.02■□□□□ 0.16
LMX1BO60663 COX11P1-201ENST00000489116 835 ntBASIC16.02■□□□□ 0.16
LMX1BO60663 YBX1P2-201ENST00000489612 999 ntBASIC16.02■□□□□ 0.16
LMX1BO60663 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.02■□□□□ 0.16
LMX1BO60663 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.02■□□□□ 0.16
LMX1BO60663 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.16
LMX1BO60663 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.02■□□□□ 0.16
LMX1BO60663 AL138966.2-201ENST00000621997 464 ntBASIC16.02■□□□□ 0.16
LMX1BO60663 AC010653.2-201ENST00000623505 997 ntBASIC16.02■□□□□ 0.16
LMX1BO60663 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1BO60663 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
LMX1BO60663 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1BO60663 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1BO60663 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
LMX1BO60663 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
LMX1BO60663 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms