Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 KRT18P5-201ENST00000436075 1291 ntBASIC13.35□□□□□ -0.27
SMKR1H3BMG3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 MYLKP1-201ENST00000509077 1580 ntBASIC13.35□□□□□ -0.27
SMKR1H3BMG3 AC006116.8-202ENST00000587620 1550 ntBASIC13.35□□□□□ -0.27
SMKR1H3BMG3 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SMKR1H3BMG3 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 AC105036.2-201ENST00000569468 176 ntBASIC13.34□□□□□ -0.27
SMKR1H3BMG3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
SMKR1H3BMG3 AC099343.3-201ENST00000605834 2503 ntBASIC13.34□□□□□ -0.27
SMKR1H3BMG3 KRT8P41-201ENST00000533985 1514 ntBASIC13.34□□□□□ -0.27
SMKR1H3BMG3 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.33□□□□□ -0.27
SMKR1H3BMG3 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.27
SMKR1H3BMG3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
SMKR1H3BMG3 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
SMKR1H3BMG3 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SMKR1H3BMG3 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
SMKR1H3BMG3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SMKR1H3BMG3 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 DUSP5P2-201ENST00000426873 1033 ntBASIC13.33□□□□□ -0.28
SMKR1H3BMG3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 MDK-213ENST00000617138 635 ntTSL 2 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SMKR1H3BMG3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms