Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 EML3-217ENST00000531557 2509 ntTSL 5 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV40A0A0B4J280 ANO7L1-203ENST00000602586 1720 ntBASIC14.83□□□□□ -0.03
TRAV40A0A0B4J280 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV40A0A0B4J280 SDHAP2-201ENST00000455183 2001 ntBASIC14.83□□□□□ -0.03
TRAV40A0A0B4J280 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV40A0A0B4J280 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV40A0A0B4J280 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV40A0A0B4J280 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV40A0A0B4J280 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 ADK-206ENST00000541550 2222 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 AL845331.1-201ENST00000424978 1190 ntBASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 AC091304.2-201ENST00000564639 760 ntBASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 AC011840.4-201ENST00000578471 627 ntBASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV40A0A0B4J280 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 AC005082.1-201ENST00000413042 2259 ntBASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 NUS1P2-201ENST00000417358 873 ntBASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 TSPY19P-201ENST00000418461 509 ntBASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 TSPY18P-201ENST00000441642 509 ntBASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 RN7SL606P-201ENST00000472779 293 ntBASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 UNC93B7-201ENST00000509439 705 ntBASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
TRAV40A0A0B4J280 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms