Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC61Q9Y6R9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC61Q9Y6R9 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC61Q9Y6R9 PMS2P7-201ENST00000506558 1336 ntBASIC24.85■■□□□ 1.57
CCDC61Q9Y6R9 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
CCDC61Q9Y6R9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC61Q9Y6R9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 ZNF259P1-201ENST00000407656 1365 ntBASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 FABP5-202ENST00000396359 986 ntTSL 5 BASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 CD63-204ENST00000546939 779 ntTSL 3 BASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 AC145285.3-201ENST00000564603 959 ntBASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 AL356309.3-201ENST00000624132 1934 ntBASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC61Q9Y6R9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 RPS2P1-201ENST00000434010 821 ntBASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
CCDC61Q9Y6R9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 SOD2-201ENST00000337404 991 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 CSF3-203ENST00000394148 622 ntTSL 3 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 PNMT-203ENST00000581428 677 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 TERC-201ENST00000602385 541 ntBASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC61Q9Y6R9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 COX10-202ENST00000429152 875 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 AC025062.2-201ENST00000605477 670 ntBASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC61Q9Y6R9 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 CD9-202ENST00000382515 1229 ntTSL 5 BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 AC012640.2-201ENST00000561606 901 ntBASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 AL139288.1-201ENST00000623748 933 ntBASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 AP000867.4-201ENST00000641616 219 ntBASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 ANO7L1-203ENST00000602586 1720 ntBASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 AC097374.2-201ENST00000618617 1306 ntBASIC24.8■■□□□ 1.56
CCDC61Q9Y6R9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC61Q9Y6R9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms